Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06985 ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCATCAGGATCTTCCAAGAGAGCTAGAGCTATGAATAATGCAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGGAGAAGAAAACCTCAACCTGAACCTATCACGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCTTTTTCAAGTTCTACTACCATGGTGAATTCAGCTTGGAGTAGCGGACTCATATCTTCCTGTGAAAGTGGTAGACTTCACATTAACAACCAACACCAGCAAGTTCATGTGGTTGATAAACAAGATCATTTTCTTGGTTCTACTGCAACCACCTACGAAGGGAAACAGCTTCAATTCTTACACAATGACAACAACAATCCCTCACTTCATAATGAAACCACACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAGCAACTTCGGTACATGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGATGCTGGTTTGAATCAAATGGTGCAGCAGCCTCATTCAATGTCCCTTATGCAGCCTTTGGGACTGAGTCTGCATGGTAACAATAACAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG 1131 0.4191 MEWNLKAPSWDLGGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSSGSSKRARAMNNATLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTTMVNSAWSSGLISSCESGRLHINNQHQQVHVVDKQDHFLGSTATTYEGKQLQFLHNDNNNPSLHNETTPLLRTSSKMFCDSLATSVHESPCALSLLSSSQTHTPDAGLNQMVQQPHSMSLMQPLGLSLHGNNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06985 376 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 354 IPR044817 GO:0003677
Mepo3g06985 376 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
Mepo3g06985 376 MobiDBLite consensus disorder prediction 159 183 - -
Mepo3g06985 376 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Mepo3g06985 376 Pfam SBP domain 97 170 IPR004333 GO:0003677
Mepo3g06985 376 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Mepo3g06985 376 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06985 Mepo-Chr3 83487472 83491337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06985 1 376 SBP-box Gene Family AT5G50670 39.851 8.95e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo3g06985 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06985 - - gmx:100787407 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06985 3 83487472 83491337 Mepo3g06985 3 83487472 83491337 ECH
Mepo2g04570 2 54167771 54171789 Mepo3g06985 3 83487472 83491337 PCT