Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06957 ATGGCAGCTTTTTCATATCAATACCATCCTTTCCTTGTTGACTCATCATTCATGCTCAACATGAACACTGCTTCTCCTCCTCCACCTTCACAGTTTCACCCTCTTCATCAAGATATTATTAACTGTGTTGATCAACAAAGCTCCAAAGTTACTACCATAACTGAGAATGAACCTTCTTCTTTCACCAAAAACCTTAGTCCACAGTCTTCCATGGTTCTGGACAAGCTTGAAAATGGTGATGAGCAGGTTACTCAGAAAAGTAGTCCTACAGAGAAGAAGAGGAGAACCAGAAACAATACTAACCCTCAATCTCATGATAATGCAGCAGAAGGGAAAAACAAGAAACAGAAGAAAAACAAAGAAGATGAGAAGGCAAAAGCAGAGAAAAAAGATCAGAGAAAGTGTTTAGATGAGCCCCCAACTGGCTATATCCACGTCCGAGCAAGAAGGGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAGCAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCTCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTACTTCCGTGAATCCTATGTTCTATGACATGGCAACAGACCTAGACACTCTTTTGGTTAGACAAGAGAAATTAAATAACTTGGCATCACCATCAACATTATCATCTGTGTCACATTGCAATAGTCCTAAACAAGGCACAACTTTTGCTGATACAACAACCATGACTCCAACCAACATCTTCCAAGCTGCTAATGACTACCTTTTGGATACTTCAGCTTCAATTTTTCTACAAGGGCAAAGGTCATCAAATGTTGTCTCTGAGGATGCTAGTCATTTTTGGGAGGTAGAAGAGCAGAGACAAAAGTTTCTTCATTCACATGGATTCAACAGCAACTTATGTTCCTTTCATTAA 990 0.397 MAAFSYQYHPFLVDSSFMLNMNTASPPPPSQFHPLHQDIINCVDQQSSKVTTITENEPSSFTKNLSPQSSMVLDKLENGDEQVTQKSSPTEKKRRTRNNTNPQSHDNAAEGKNKKQKKNKEDEKAKAEKKDQRKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTLLVRQEKLNNLASPSTLSSVSHCNSPKQGTTFADTTTMTPTNIFQAANDYLLDTSASIFLQGQRSSNVVSEDASHFWEVEEQRQKFLHSHGFNSNLCSFH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06957 329 MobiDBLite consensus disorder prediction 75 144 - -
Mepo3g06957 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 258 IPR024097 GO:0006355
Mepo3g06957 329 MobiDBLite consensus disorder prediction 49 68 - -
Mepo3g06957 329 CDD bHLH_AtBPE_like 142 227 - -
Mepo3g06957 329 Gene3D - 149 222 IPR036638 GO:0046983
Mepo3g06957 329 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Mepo3g06957 329 SMART finulus 158 208 IPR011598 GO:0046983
Mepo3g06957 329 MobiDBLite consensus disorder prediction 86 100 - -
Mepo3g06957 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 219 IPR036638 GO:0046983
Mepo3g06957 329 Coils Coil 112 133 - -
Mepo3g06957 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Mepo3g06957 329 FunFam Basic helix-loop-helix transcription factor 149 221 - -
Mepo3g06957 329 MobiDBLite consensus disorder prediction 108 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06957 Mepo-Chr3 83226735 83229300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06957 73 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 50.228 3.61e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g06957 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06957 - - gmx:100806696 433.335