Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06951 ATGATGTCCAGAATGAACCACAACAACAATGGTTGGATGGAAGAAAGAGAAGACGAAAACAACTCTACAAACCCAAACACTCCTTCATCTGCTTTCATCCATAACCATAACAACAACACACAACAAGATTTCTCTTCTTTCATCAAACCCATGCTTGGTGAAATCGATGAAGATGATGATGAACAATGGTACATCAGAGACATGTCTTTTTCTTCTTCTCCTAACTTAGACAACGTTTTACTTCACACCATCAATGATTCCGTTTCTTCTTCATGTTCACCTTCTTCCTCCGTTTTCAACACCCTTCTTCATCCTGAACCAACACCATCCAATTCCAACCATCTTCAGTATTTTCTTCCTCCTCAAAATCACAAACCTATTAACCCTTTTGAACTTCCTTGTGAACTTGGTTTTCTTGATCATCAAGCTTCAACAATGGCTACTTCTTCTTTTATCAGTAGTTTTGTTGATTTCGCTTCGAAAGCTCCATTAACAGCTACTGCTACTACTACTACTACTACTCAGTTGAGCTTGCCCCATTTGCCTCAAATCAACAATGCCTTCATGGGGTTTCAGAACTCTCAAGAGGGTTCTGGAAAGTCACTGTTTTTGAGACCACTTGATTCTTTGCCTTCTTCTGGAACACAACCTACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACATGGGAAAGTGTGAGATTGGTGAAGGGAGTGATAAGAAAAGGAAGTTCAGTGGTGGAGATGAAATTGATGATTTGAGTTTTGATGGGTCTGGTTTGAATTATGATTCTGATGATTTGGCCGAGAGTAATGGAAAAAATAATGGAAATGGTTCCAATGGTAATAGTACTGTTACTGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCCGAACGTCGCCGGAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTCCATCCTTTGACACCGACACCATCTTCGTTGCCGGGCCGTATCAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTAAATATCCACATGTTTTGTACCCGCAAACCTGGTATGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGTTGTTTCAATGGATATGCTATGGATATTTTCAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTCCATCCAGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGATCTAA 1461 0.4168 MMSRMNHNNNGWMEEREDENNSTNPNTPSSAFIHNHNNNTQQDFSSFIKPMLGEIDEDDDEQWYIRDMSFSSSPNLDNVLLHTINDSVSSSCSPSSSVFNTLLHPEPTPSNSNHLQYFLPPQNHKPINPFELPCELGFLDHQASTMATSSFISSFVDFASKAPLTATATTTTTTQLSLPHLPQINNAFMGFQNSQEGSGKSLFLRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGEGSDKKRKFSGGDEIDDLSFDGSGLNYDSDDLAESNGKNNGNGSNGNSTVTDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPSSLPGRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCTRKPGMLLSTMRALDNLGLDIQQAVISCFNGYAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFNGMI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06951 486 CDD bHLH_AtAMS_like 298 363 - -
Mepo3g06951 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 362 IPR036638 GO:0046983
Mepo3g06951 486 MobiDBLite consensus disorder prediction 356 380 - -
Mepo3g06951 486 MobiDBLite consensus disorder prediction 262 308 - -
Mepo3g06951 486 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 179 483 - -
Mepo3g06951 486 MobiDBLite consensus disorder prediction 1 34 - -
Mepo3g06951 486 Pfam Helix-loop-helix DNA-binding domain 302 344 IPR011598 GO:0046983
Mepo3g06951 486 MobiDBLite consensus disorder prediction 292 308 - -
Mepo3g06951 486 SMART finulus 301 350 IPR011598 GO:0046983
Mepo3g06951 486 Coils Coil 334 358 - -
Mepo3g06951 486 FunFam BHLH transcription factor 291 359 - -
Mepo3g06951 486 CDD ACT_UUR-ACR-like 415 475 - -
Mepo3g06951 486 MobiDBLite consensus disorder prediction 356 376 - -
Mepo3g06951 486 Gene3D - 287 359 IPR036638 GO:0046983
Mepo3g06951 486 MobiDBLite consensus disorder prediction 265 290 - -
Mepo3g06951 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06951 Mepo-Chr3 83148062 83150740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06951 41 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.685 3.38e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g06951 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06951 - - gmx:100217341 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01619 1 15935272 15937390 Mepo3g06951 3 83148062 83150740 ECH
Mepo3g06951 3 83148062 83150740 Mepo3g06951 3 83148062 83150740 ECH