Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06946 ATGCCTTTTGAAATAATGAACCAGAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAATCTATTCATGATGATTATCCACAAGGGAAGAGTGAAATGGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTTGAAAGAAATGCAAAAATAGGCTTGCCAATGCCACAGACTAGTTTATCAGGGGAAGTTTTAGAAAACCTACACTTTGGTGCACAAGCTGGCATGGTAGATGCGCTGAAGGATTCAAAGGAATCGTTGAATTATCACCCGAGATCATGGTCTGATGTGCATAGGCAACCAGCATCTAGCTCATATGGTTTAATTGGGAACAAGATTGTCACCAATGCAGGTGCACGTGAAAGCAGTCTATTCTCAAGCTCACTGTCTGATATGTTTAGCCAAAAATTGAGGTTCTTGGGAAATGGTGTTCAGTCTGATCAGAATATTACTGCTGGTTCTCTTGCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGGGATCTCCTTCCTGACGAAGATGATCTGTTTTCCGGTGTCACTGATGGTTTAGGAAGCAGTGCTCATGCTAGAGCAAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACTTTCAGCTTCAGGAAAAAGAATCAGTGGCTTGGATGGTGATCCTGCTTACTCTGGGGCTTTTAAAGGCAAAAGTTCTTTTGGTGAAGAATCTTCTAGAACACTTTTTGTTGGAAACATTACTAGCAATGCAGAAGACTCGGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCCTTTATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGACATTGAGTTCTAGGAAACTGGATATACGTTATTCAATTCCAAAGGGAAATCCTACAGAGAAGGATATTGGCCATGGTACACTGATGATATCTGGTCTTGATTCATGTGTTTTGAAAGACGAACTAAAACGCATTTTTGGATTTTATGGAGAAATCAAAGAGATCTATGAATATCCAGAGATGAATCATATCAAATATATTGAATTTTATGACGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGAATCTGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGTCATCCTAGGATCGCAATATGTATGACTCAGCCATCTCAAAAGGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACATCTTATTCTTAAGACAGAAGGCCGGACTATCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCAAAGATTCCAATCTGCATCACAGCTGCCTTTGAATGCTTTCTTTGATAACACAAATTTTCACGTGAATTCTAGTATTTCCAACACCACAAGGGGGGCATCTGCTGTAAAAGTATCTGGTGACTCCAGTAATGTTGATGCAATGAAATTTGCATCTATTCCAAGAATGCACCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGCAGTCCTTACAATTTGCCAAACACCATTAAAATGGCTGCCAATATTGGAACTGGATCCACAGAAGCATCTGATGGCAGGCATATTCAGGGAATGATCTCAACTGGGAACTTAGCAGATTTTAATGCAGGAGGAAATGGGAGCCTTCCCCATCATCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCTGTGGTTTGGCAGAAAACGCCATCTTTTGTTAATGGCGTTGGTTCTCCTGGTCTTCCTCAGATGCCTAGCTTTCCCAGAACACCGGCTCATATGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACGGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCCTGGTTTTAGATTGGGTTCTCTAGGAAATGCAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCTGATCTTTCAAGCAACATGTTTTCTCATATTGGTGGGAATGGTAACGATTTGACATCCAGTGTTGGGCATGGCTCTCCTAAGCAGTTGTCACATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCGAAATTTGATTCTACCAATGAACGGATGAGAAACTTCTATCATCGTAGAAGTGAAGCGAACAATAACAATGCTGATAAAAAACAATTTGAACTCGACCTAGGCCGCATATCGCGTGGGGAAGACAACCGAACAACACTGATGATAAAAAATATTCCCAACAAATATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAGTGTAATGTTGGCTATGCATTCATCAATATGATTGACCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCAGTCCTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCCGGTGATCCGGAGCCTTTTCCCTTGGGTGCAAATATTAGAGTAAGGCCGGGAAAATTACGTAGTAGTGGCAACGAGGAGAGCCGTAGTCAAGGGAATTCTTCAACTTTGGCAAATGCAGAGGAGTTTGCAAGTGGAATAGATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2910 0.4172 MPFEIMNQRGVTASSHLYDDVSYASERNVGLRKPKSIHDDYPQGKSEMAASPGGILHTSSTLERNAKIGLPMPQTSLSGEVLENLHFGAQAGMVDALKDSKESLNYHPRSWSDVHRQPASSSYGLIGNKIVTNAGARESSLFSSSLSDMFSQKLRFLGNGVQSDQNITAGSLAEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDGLGSSAHARASDDFEDFDLFSSGGGMELEGDELSASGKRISGLDGDPAYSGAFKGKSSFGEESSRTLFVGNITSNAEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSCVLKDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKQIKLEPGHPRIAICMTQPSQKGQDEPDLGHNLNDILFLRQKAGLSSGVIASGGSLENGYNQRFQSASQLPLNAFFDNTNFHVNSSISNTTRGASAVKVSGDSSNVDAMKFASIPRMHPHSLPEYRDGLANGSPYNLPNTIKMAANIGTGSTEASDGRHIQGMISTGNLADFNAGGNGSLPHHQLYHMWNGSNLRQQSPSNAVVWQKTPSFVNGVGSPGLPQMPSFPRTPAHMLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDAPGFRLGSLGNAGFHGSWQLHPPDLSSNMFSHIGGNGNDLTSSVGHGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNFYHRRSEANNNNADKKQFELDLGRISRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRVRPGKLRSSGNEESRSQGNSSTLANAEEFASGIDSSPSSSRDTD 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06946 969 CDD RRM1_MEI2_like 269 344 IPR034453 -
Mepo3g06946 969 MobiDBLite consensus disorder prediction 935 969 - -
Mepo3g06946 969 SUPERFAMILY RNA-binding domain, RBD 267 426 IPR035979 GO:0003676
Mepo3g06946 969 CDD RRM3_MEI2_like 796 881 IPR034454 -
Mepo3g06946 969 MobiDBLite consensus disorder prediction 904 969 - -
Mepo3g06946 969 Gene3D - 240 351 IPR012677 -
Mepo3g06946 969 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Mepo3g06946 969 Pfam RNA recognition motif 2 793 889 IPR007201 -
Mepo3g06946 969 PANTHER RNA RECOGNITION MOTIF-CONTAINING 112 965 - -
Mepo3g06946 969 SMART rrm1_1 795 873 IPR000504 GO:0003723
Mepo3g06946 969 SMART rrm1_1 356 424 IPR000504 GO:0003723
Mepo3g06946 969 SMART rrm1_1 271 339 IPR000504 GO:0003723
Mepo3g06946 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Mepo3g06946 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Mepo3g06946 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Mepo3g06946 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Mepo3g06946 969 FunFam Protein MEI2-like 1 261 352 - -
Mepo3g06946 969 Gene3D - 352 447 IPR012677 -
Mepo3g06946 969 MobiDBLite consensus disorder prediction 33 57 - -
Mepo3g06946 969 FunFam Protein MEI2-like 1 354 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06946 Mepo-Chr3 83096775 83104714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06946 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 23.596 4.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06946 - - gmx:100797616 1497.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06946 3 83096775 83104714 Mepo3g06946 3 83096775 83104714 ECH
Mepo2g04526 2 53683042 53690683 Mepo3g06946 3 83096775 83104714 PCT