Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06908 ATGTCGAAATCCAACACCACCAACCCAACACCACCAAAACCCACATGGGTTCTCCCTTATGTAACTGAAAATCTTCGTGAAGTTTACACCTTAGGTAGAAAACTGGGTCAAGGTCAATTTGGGATCACATATCACTGCACACACAACTCAACCGGTAGAACCTATGCTTGCAAATCAATCTCAAAGAAGAAGCTTTTATGCAAAGAGGATTATGATGATGTTTGGAGAGAGATTCAGATAATGCACCATTTGTCTGAAAATCCAAATGTTGTGAGGATCCATGGAACTTATGAGGATTCGTTTTCTGTTCATTTGGTTATGGAGCTTTGTGAAGGTGGGGAATTGTTTGATAGGATTGTGCAGAAGGGTCATTACAGTGAGAGACAAGCTGCTAAGTTGATTAGAACTATTGTTGAGGTTGTTGAAGCTTGTCATTCTCTTGGTGTTATGCATAGAGACCTTAAACCTGAGAATTTTTTGTTTGATTCTGTTGATGAAGATGCTCTTCTCAAAACTATTGACTTTGGGTTGTCTGTTTTTTACAAGCCAGGTGAAATCTTTAGTGATGTTGTTGGAAGCCCATACTATGTTGCGCCAGAGGTCTTGCACAAGCATTATGGACCTGAAGCAGACGTGTGGAGTGCTGGCGTTATTTTGTACATCTTATTAAGCGGGGTGCCTCCGTTTTGGGCCGAGACCGATCAAGGGATCTTCAGACAGATTTTCCAAGGAAAACTTGATTTCCGGTCTGAGCCATGGCCTGGGATTTCAGACAGTGCCAAGGATCTAATTCGAAAAATGCTTGATAGGAACCCAAAAACAAGATTTACAGCTCACCAAGTGCTCTGTCACCCGTGGATTGTCGATGATAACATTGCACCAGACAAACCTCTTGATTCTGCTGTTTTATCTCGCCTGAAGCAGTTCTCTGCGATGAATAAACTTAAAAAGATGGCTTTACGTGTTATTGCGGAGAGGCTTTCTGAGGAAGAAATTGGTGGTTTGAAGGAGTTATTCAGGATGCTTGATGCTGATAATAGTGGAACTATAACATTGGAAGAGTTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCGGATATTGATAATAACGGGACACTTGACTATGGCGAATTCATTGCTGCTACTGTGCACTTAAATAAGCTGGAGAGAGAGGAAAATCTGTTGTCGGCATTCTCCTACTTTGACAAAGATTGTAGTGGTTACATAACAATCGACGAGATTCAAGCAGCTTGTAAAGAGTTTGGCTTAGATGATGTCCACATTGATGAAATGGTCAAGGAAATTGATCAGGATAATGATGGACAAATCGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGGGGGATTGGAAGGAGAACCATGACAAGCACACTTAATTTCAGAGATGCTCTTGGAATCATAGGCAATGGGTCCAATTAA 1488 0.4133 MSKSNTTNPTPPKPTWVLPYVTENLREVYTLGRKLGQGQFGITYHCTHNSTGRTYACKSISKKKLLCKEDYDDVWREIQIMHHLSENPNVVRIHGTYEDSFSVHLVMELCEGGELFDRIVQKGHYSERQAAKLIRTIVEVVEACHSLGVMHRDLKPENFLFDSVDEDALLKTIDFGLSVFYKPGEIFSDVVGSPYYVAPEVLHKHYGPEADVWSAGVILYILLSGVPPFWAETDQGIFRQIFQGKLDFRSEPWPGISDSAKDLIRKMLDRNPKTRFTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFRMLDADNSGTITLEELKEGLKRVGSELMESEIKDLMDAADIDNNGTLDYGEFIAATVHLNKLEREENLLSAFSYFDKDCSGYITIDEIQAACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMTSTLNFRDALGIIGNGSN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06908 495 SMART efh_1 370 398 IPR002048 GO:0005509
Mepo3g06908 495 SMART efh_1 406 434 IPR002048 GO:0005509
Mepo3g06908 495 SMART efh_1 440 468 IPR002048 GO:0005509
Mepo3g06908 495 SMART efh_1 334 362 IPR002048 GO:0005509
Mepo3g06908 495 SUPERFAMILY EF-hand 326 466 IPR011992 -
Mepo3g06908 495 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Mepo3g06908 495 FunFam calcium-dependent protein kinase SK5 324 396 - -
Mepo3g06908 495 FunFam Calcium-dependent protein kinase 1 31 114 - -
Mepo3g06908 495 CDD EFh 407 466 IPR002048 GO:0005509
Mepo3g06908 495 SMART serkin_6 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo3g06908 495 FunFam Calcium-dependent protein kinase SK5 115 299 - -
Mepo3g06908 495 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Mepo3g06908 495 Gene3D Phosphorylase Kinase; domain 1 31 115 - -
Mepo3g06908 495 Pfam Protein kinase domain 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo3g06908 495 Coils Coil 352 372 - -
Mepo3g06908 495 Gene3D Transferase(Phosphotransferase) domain 1 116 327 - -
Mepo3g06908 495 SUPERFAMILY Protein kinase-like (PK-like) 13 306 IPR011009 -
Mepo3g06908 495 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo3g06908 495 ProSitePatterns EF-hand calcium-binding domain. 343 355 IPR018247 -
Mepo3g06908 495 CDD STKc_CAMK 28 286 - -
Mepo3g06908 495 ProSiteProfiles EF-hand calcium-binding domain profile. 330 365 IPR002048 GO:0005509
Mepo3g06908 495 Pfam EF-hand domain pair 405 466 IPR002048 GO:0005509
Mepo3g06908 495 Pfam EF-hand domain pair 335 395 IPR002048 GO:0005509
Mepo3g06908 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Mepo3g06908 495 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Mepo3g06908 495 CDD EFh 335 394 IPR002048 GO:0005509
Mepo3g06908 495 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Mepo3g06908 495 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Mepo3g06908 495 Gene3D - 400 494 - -
Mepo3g06908 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 461 - -
Mepo3g06908 495 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Mepo3g06908 495 ProSiteProfiles EF-hand calcium-binding domain profile. 440 471 IPR002048 GO:0005509
Mepo3g06908 495 FunFam Calcium-dependent protein kinase SK5 400 495 - -
Mepo3g06908 495 Gene3D - 328 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06908 Mepo-Chr3 82787213 82792212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06908 7 495 EF-hand Containing Proteins AT1G35670 75.862 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mepo3g06908 Pkinase 3.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06908 K13412 - gmx:100790443 894.804