Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06901 ATGGGCAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATGAACGTCTCATTAACTACATCAAGCTTCATGGGGAAGGCTGTTGGAGGTCTCTTCCAAAAGCTGCTGGCTTGCTAAGATGTGGCAAGAGTTGCAGATTGAGATGGATAAATTACCTCAGACCTGATCTCAAGAGAGGAAACTTCACTGAACAAGAAGATGATCTTATCATTAACCTCCACAGCTTACTTGGAAACAAATGGTCGTTAATAGCTGCTAGATTACCAGGAAGAACAGATAATGAGATCAAGAATTACTGGAACACTCACATCAAGCGAAAACTCTACAGCCGTGGAGTCGACCCTCAGACTCATCGGCCACTTAACGACTCAACGGCATCCACCACCATAATTCCACCAGCTAATGCTGCAGTGTCAATATCTCAAATTCCCACAAGCAACATCAAGAATATGATCATCGATGATATTAGCATTATTAGCAGCAACAGCAACAAAAACAATTTTCAGTTAGTGAGTGGCTATGCCAATGCAAAGATTAATGGAACCAAGTTGGTCTGTGAAGATTCAAATTCAAATAACAGTAGCGGTGTTAGCTCCGAGGAAGCATGTCATCATCAACTTAATTTGGACCTTTCCATTGGTCTTCCATCCTCACATCCTCAAGTTAACGATGAAAAATTGAAATTGCAACCACTACAAGGTGATGAGCAACAAGAAACAAAGGTTACTACTAATCACGGTTTGTGTCTTTGTTATGGTCTAGGGTTTCAAAGCAACCAAGTGTGTTGCTGCAACAAAGCCATAGGTAACACTGTTGCTACAAATGTCACCGATAATAATATGTATAGATTTTACAGACCCATGAATATTTAG 897 0.4058 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGVDPQTHRPLNDSTASTTIIPPANAAVSISQIPTSNIKNMIIDDISIISSNSNKNNFQLVSGYANAKINGTKLVCEDSNSNNSSGVSSEEACHHQLNLDLSIGLPSSHPQVNDEKLKLQPLQGDEQQETKVTTNHGLCLCYGLGFQSNQVCCCNKAIGNTVATNVTDNNMYRFYRPMNI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06901 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mepo3g06901 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo3g06901 298 CDD SANT 69 112 IPR001005 -
Mepo3g06901 298 Gene3D - 68 136 - -
Mepo3g06901 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo3g06901 298 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mepo3g06901 298 CDD SANT 16 61 IPR001005 -
Mepo3g06901 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mepo3g06901 298 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Mepo3g06901 298 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 225 - -
Mepo3g06901 298 FunFam MYB-related transcription factor 13 66 - -
Mepo3g06901 298 Gene3D - 14 66 - -
Mepo3g06901 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo3g06901 298 FunFam Myb transcription factor 68 137 - -
Mepo3g06901 298 SMART sant 13 63 IPR001005 -
Mepo3g06901 298 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06901 Mepo-Chr3 82716914 82718871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06901 1 225 MYB Transcription Factor Family AT4G09460 60.352 4.86e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g06901 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06901 K09422 - gmx:100808083 403.675