Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06848 ATGAACAAATCCAACTCACGCAAGCGTCCAGCGGGGCCTCCGTCGCAACCACCACCGTCAAAGCATGCAGCGTCCCAGGAAGAAGAGTTCATCGACGAAGACGTCTTCCTAGACGAAAACCTAATTTCCGAAGACGAAGAATCCGCAATTCTCCGTGACTTAGAACAACACCAAGACCTAGCTTCTCGTCTCGCTAAGTGGAATCGTCCTCCTCTCTCTGAGGAGTATCTCTCTCAATCTTGTAGCGTTCTTTTTCAGCAGCTAGAGATTGATTATGTGATTGGAGAGAGTCATAAAGAATTTACACCAAAAATATCTGGACCTGCTGCTATAATTCGAATATTTGGGGTAACGAAGGAAGGACATAGCGTTTGCTGCAAGGTTCACGGGTTTCAACCATATTTCTACATCAACTGCCCTCCTGGAATGAGATTAGAAGATCTCTCCAGTTTTCAGAAAGTACTCGAGGCAAGGATGAGAGAAGCCAATAGAAACAGCAATGTACAAGGAAACTACGTTCGTGATGTTGTCTTTGTGCAGAAAAAGAGCATTATGTACTATCAGCAAACAGATTTACATCCCTTTATCAAAATTACCGTTGCACTCCCAACAATGGTTGCTAGCTGCCGTGGTATTCTTGATAGAGGCATTCAGATTGATGGTCTTGGCATGAAAAGTTTCCCGACTTATGAAAGCAATGTACTTTTTGCTCTTCGTTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCTGCTGGCAAATATAAAAAGACAACAAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAGTATTCAAGGATGGCTCCGTTTCGCATTTTGAGTTTTGACATTGAATGTGCTGGCCGCAAAGGTCACTTCCCTGAACCCACCCATGATCCCGTGATCCAGATTGCTAATCTGGTAACTCTACAAGGAGAGGACCAGCCATTAATTCGTAACGTGATGACCCTTAACTCATGTTCCCCTATTGTTGGTGTTGATGTGATGTCATTTGATACAGAAGGAGAAGTCCTGCTAGCTTGGAGGGATTTCATCCGTGAAGTAGACCCTGATATTATTATTGGATATAACATCTGCAAATTCGACTTGCCTTATCTTATTGAGAGAGCTGCGACCCTAAAGATAGCAGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGTGTAAAAGATACAACTTTTTCATCAAGGCAGTATGGGATCAGGGAAAGTAAAGAAGTCACCGTAGAAGGGAGAGTCCAATTTGATCTGCTCCAGGTTATGCAAAGAGACTACAAGTTAAGTTCTTATTCATTGAATTCTGTGTCGGCACATTTCCTTTCTGAGCAGAAGGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGAAGGCGCCTTGCTGTGTATTGCTTGAAGGATGCATACCTCCCCCAACGACTTTTGGATAAATTGATGTTTGTTTACAATTATGTGGAAATGGCTCGTGTAACAGGTGTCCCAATTTCCTTTCTACTTTCCAGGGGCCAGAGCATCAAGGTACTTTCTCAACTTCTTAGGAAGGCAAAACAAAAGAATCTGGTCATTCCTAATGCCAAGCAGGCAGGGTCAGAACAAGGAACATTTGAAGGTGCCACTGTATTAGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTGGATTTTGCTTCCTTGTATCCGTCTATTATGATGGCATATAATTTATGTTATTGCACACTGGTGACCCCTGAAAATGCTCGCATGCTCAACATCCCCCCGGAGTCAACGAACAAAACGCCATCTGGTGAAACATTTGTTAAATCAAATTTACAGAAAGGCATACTTCCTGAAATACTTGAAGAGCTATTAGCAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTTCTAGATGGCAGACAGTTGGCTCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTTCTATTGGTCAGTTACCTTGCTTAGAGATATCGTCAAGTGTAACTAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTTGTCGAAGAGAAGTTTACAACAGTTAATGGCTATGTAAACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTACTGTAAAAGATGCTATGGATTTGGGGAAGGAAGCTGCTGAACATATTAGCGGAACTTTCACAAAACCTATCAAACTAGAATTTGAGAAGGTTTACTGTCCATACCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAAGCGGAGAGTCATGACAAAATGGACACTAAAGGCATTGAAACAGTTCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAAATGACTGCCTTCACAAAATACTGATCGAGAAGAACATTCCTGCGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAACCGTATAGATTTATCACTTCTGGTTATTACGAAGGGTTTGACAAAGACAGGAGATGACTATGAAGTAAAGACAGCTCATGTTGAACTCGCTGAAAGGATGCGAAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTTATTATTAAAGCTGCCAAAGGTGCCAAGGCTTATGAGAGATCAGAGGATCCTATCTATGTGCTAGAGAACAACATACCCATAGATCCTCAATACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCGTCAAACAGCGGTATAATGAAATTTGCCAAGAAGCAGTATACTTGCATTGGTTGCAAAGCTTTACTTAGTAATGGTCGCACTCTCTGCTCACATTGCGAAGGAAGGGAAGCTGAACTGTATTGTAAAAATGTTGCTCAAGTGTCGGATCTAGAGAAACTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTATCGACGCAAAAAGGCACAAAAAGATATGGCTGAAGCAAGGTTGCAATTGGATAGATGGAACTTCTGA 3258 0.4156 MNKSNSRKRPAGPPSQPPPSKHAASQEEEFIDEDVFLDENLISEDEESAILRDLEQHQDLASRLAKWNRPPLSEEYLSQSCSVLFQQLEIDYVIGESHKEFTPKISGPAAIIRIFGVTKEGHSVCCKVHGFQPYFYINCPPGMRLEDLSSFQKVLEARMREANRNSNVQGNYVRDVVFVQKKSIMYYQQTDLHPFIKITVALPTMVASCRGILDRGIQIDGLGMKSFPTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTTKSLSYCQLEFDCLYSDLISHAPEGEYSRMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVMSFDTEGEVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAATLKIAEFPILGRIRNSRVRVKDTTFSSRQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARMLNIPPESTNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGASIGQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTTVNGYVNNAEVIYGDTDSVMVQFGVSTVKDAMDLGKEAAEHISGTFTKPIKLEFEKVYCPYLLISKKRYAGLFWTKAESHDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIEKNIPAAVQYVKNAISDLLMNRIDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSNGRTLCSHCEGREAELYCKNVAQVSDLEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06848 1085 Gene3D DNA Polymerase, chain B, domain 1 88 265 - -
Mepo3g06848 1085 Gene3D - 294 512 IPR036397 GO:0003676
Mepo3g06848 1085 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 68 1051 - -
Mepo3g06848 1085 CDD POLBc_delta 567 960 - -
Mepo3g06848 1085 MobiDBLite consensus disorder prediction 1 29 - -
Mepo3g06848 1085 Gene3D Palm domain of DNA polymerase 568 797 IPR023211 -
Mepo3g06848 1085 FunFam DNA polymerase 333 566 - -
Mepo3g06848 1085 NCBIfam DNA polymerase (pol2) 548 957 - -
Mepo3g06848 1085 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Mepo3g06848 1085 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Mepo3g06848 1085 FunFam DNA polymerase 89 265 - -
Mepo3g06848 1085 Gene3D Helix hairpin bin 641 693 - -
Mepo3g06848 1085 SUPERFAMILY Ribonuclease H-like 107 532 IPR012337 -
Mepo3g06848 1085 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Mepo3g06848 1085 CDD DNA_polB_delta_exo 289 518 - -
Mepo3g06848 1085 FunFam DNA polymerase 641 693 - -
Mepo3g06848 1085 Pfam DNA polymerase family B, exonuclease domain 118 462 IPR006133 -
Mepo3g06848 1085 Pfam C4-type zinc-finger of DNA polymerase delta 996 1066 IPR025687 -
Mepo3g06848 1085 FunFam DNA polymerase 814 970 - -
Mepo3g06848 1085 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g06848 1085 Gene3D - 814 969 IPR042087 -
Mepo3g06848 1085 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g06848 1085 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g06848 1085 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06848 Mepo-Chr3 82203122 82218752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06848 19 1085 Core DNA Replication Machinery Family AT5G63960 79.945 0.0 1812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06848 K02327 - gmx:100817379 1900.56