LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g06839	ATGGGAGATATTGTCAAGCTTCCTCCTGGGTTTGTCTTCTCTCCAACAGATGAAGAACTTATCCTTCACTTTCTCTATTCTAAGGCTTCTCTTGTTCAATCTCATCCAAACTTCATCCCTGACCTAGATCCGTCTCTACTTCTTCCTTGGGAATTAAATGATAAGGCATTGTGCGGTGGAAATGATGAATACTATTTCTTCGCCAAAGTGAAGGAAAATAAATCCAGTACTGAAAATGGATATTGGGAGGAAATTGGTGTGACAGAACCAATATTTTCAGGCACTGACCAGAAAGTGGGAATGAAGAAGTACCTATTATTCCACATTGGCGAATTAACACAAAGTTCTGAAACAAGTTGGGTAATGCAAGAATATCATATTTGCTCCACTGGATTTGATCAAAGTACTGTTTCATATCATGGTGATAAAGTGGGTGAAAATTGGAGCGAGTGGGTTTTATGCAGAGTCTATGAAATTGACAAGAACATGTATCCTCAACAAGGTGTGAATTACTGCAACAGCGATGATGATGACAGTGGAACTGATCTTTCATGGCAAGACCAAGTTTTTCTGTCTTTGGAGTTGGAAGATGACATGGAAGGAATTGAGCACAACTATATATAA	624	0.3878	MGDIVKLPPGFVFSPTDEELILHFLYSKASLVQSHPNFIPDLDPSLLLPWELNDKALCGGNDEYYFFAKVKENKSSTENGYWEEIGVTEPIFSGTDQKVGMKKYLLFHIGELTQSSETSWVMQEYHICSTGFDQSTVSYHGDKVGENWSEWVLCRVYEIDKNMYPQQGVNYCNSDDDDSGTDLSWQDQVFLSLELEDDMEGIEHNYI	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g06839	207	Pfam	No apical meristem (NAM) protein	8	127	IPR003441	GO:0003677\|GO:0006355
	Mepo3g06839	207	PANTHER	NAC TRANSCRIPTION FACTOR 56	7	162	-	-
	Mepo3g06839	207	SUPERFAMILY	NAC domain	4	157	IPR036093	GO:0003677\|GO:0006355
	Mepo3g06839	207	Gene3D	NAC domain	16	164	IPR036093	GO:0003677\|GO:0006355
	Mepo3g06839	207	ProSiteProfiles	NAC domain profile.	7	159	IPR003441	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g06839	Mepo-Chr3	82119746	82120792	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g06839	7	165	NAC Transcription Factor Family	AT1G61110	36.842	3.92e-29	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Mepo3g06839		NAM	2.8e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g06839	-		-	gmx:100170711	254.988