Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06810 ATGGCTCCGGCGACAGCTCCGGCGTCTCCATCGCCGTCTTCTATCAAGCTATCAAGCTTAATCCGCCGCACCCATGCACCTCACAAAATTCAAAAGAAGCTGTCATACTCCTCCTCCTCCTCCACCTTCGAGGAGGAGGAGGGGATGAAGTCCTTGTCGCTTGTTAATATATATAAGAGGGCTGAGTACACGGTGGCTGAGGAGGAGGATTACGGGGACCTCCTGTGTGAGCAATGTGGGTCCGGTGAACAACCGGAGGAGCTGCTTTTGTGTGACAAATGTGACAATGGTTTTCATATGAAATGTGTCAGACCAATTGTTGTTCGAGTTCCGATTGGTCCGTGGATTTGCCCCAAGTGTTCTGATGTGAAGGTCAAGAAACTCAAAAAGCTTTCTCAGAAGAAAATTCTCCATTTCTTCGGGCTTCGTAGGGATTCTCTTGGTTTAGGGAACAATCGTGCTTCTTCTCAGGATGCTGCTATGAAGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGGAGAAGGCTTCTACCATTTGTTCCTACAGAAGATCCTGATAGGAGGCTGAAACAATTGGCTTCCCTTGCTACCGCTTTAACAGCATTGGATATAGAGTTCAGCAATAAGCTGACGTACTTTCCAGGAATGGCTCCTAGATCTGCTAATCGATCCATTTTAGAGAACGGTGGCATGCAGGCTCTTACTAAGGAAGATACAAAGACCTTAAAACGCTGCATAGCCATGACTAAACGAGGCCAATTCCCTCCCTTAATGGTCGTTTATGATTCATGCCAAGGCTATACTGTGGAGGCTGATAGCCCAATCAAAGATATGACATTTATTGCTGAATACACTGGCGATGTTGATTATATAAAGAAGCGAGAATCTGATGATTGTGACAGTATGATGACGCTGATTATTGCAGCAGAAGCTGCTGACAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTCATCAGTGGCATCAACAATCATACTCAGGAAGGCAGGAAGAAGCAGAACTGTAAATGTGTGAGATATGATGTTAATGGTGAAAGCCGGGTCTTATTGGTTGCTACTCGAGACATTTCCAAGGGGGAGAGGCTTTATTATGACTATAATGGTTATGTGCATGAATACCCAACTCATCATTTTGTCTGA 1179 0.4538 MAPATAPASPSPSSIKLSSLIRRTHAPHKIQKKLSYSSSSSTFEEEEGMKSLSLVNIYKRAEYTVAEEEDYGDLLCEQCGSGEQPEELLLCDKCDNGFHMKCVRPIVVRVPIGPWICPKCSDVKVKKLKKLSQKKILHFFGLRRDSLGLGNNRASSQDAAMKRRRRPRPLVVQKKRRRLLPFVPTEDPDRRLKQLASLATALTALDIEFSNKLTYFPGMAPRSANRSILENGGMQALTKEDTKTLKRCIAMTKRGQFPPLMVVYDSCQGYTVEADSPIKDMTFIAEYTGDVDYIKKRESDDCDSMMTLIIAAEAADSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYDVNGESRVLLVATRDISKGERLYYDYNGYVHEYPTHHFV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06810 392 CDD PHD_RSF1 75 120 - -
Mepo3g06810 392 Gene3D SET domain 164 392 IPR046341 -
Mepo3g06810 392 SMART PHD_3 75 121 IPR001965 -
Mepo3g06810 392 Pfam PHD-finger 76 121 IPR019787 -
Mepo3g06810 392 ProSiteProfiles Zinc finger PHD-type profile. 73 123 IPR019787 -
Mepo3g06810 392 ProSiteProfiles SET domain profile. 258 380 IPR001214 GO:0005515
Mepo3g06810 392 FunFam Histone-lysine N-methyltransferase ATXR5 164 392 - -
Mepo3g06810 392 Pfam SET domain 149 380 IPR001214 GO:0005515
Mepo3g06810 392 CDD SET_ATXR5_6-like 255 392 - -
Mepo3g06810 392 SUPERFAMILY SET domain 249 380 IPR046341 -
Mepo3g06810 392 ProSitePatterns Zinc finger PHD-type signature. 76 120 IPR019786 -
Mepo3g06810 392 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 129 390 - -
Mepo3g06810 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 135 IPR013083 -
Mepo3g06810 392 SUPERFAMILY FYVE/PHD zinc finger 61 127 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06810 Mepo-Chr3 81853974 81858009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06810 71 137 C2H2 Transcription Factor Family AT3G01460 32.836 5.49e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g06810 SET 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06810 K24406 - gmx:100785817 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06810 3 81853974 81858009 Mepo3g06810 3 81853974 81858009 ECH