Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06803 ATGGTTAGGGAAAGAGTTGTTGATCTATGCATCACTGTTCCCACCTTCTTCAAATGCCCAATCTCACTCGACGTTATGAAATCCCCTGTTAGTCTCTGCACCGGTGTCACCTACGATCGTTCCAGCATCCAACGCTGGTTAGACGACGGTAACAACACGTGTCCCGCCACCATGCAAATACTTCCCACCAAAGATTTTGTACCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCATCACCGGCTCGAACCTGTCGTTTCACCTTCAGTTCTTTCTAATGAACAACTCCTTCAAACCATCACTGACTTAGCCTCTTCCGGTTTAAACCGGTTCGGTTTAATCACGAAAGTCATTCGTTTCGCTCAAGATTCCGATCAGAACCGAACGTTTCTCCCGAAATTAGACGGTTTTATTCCGTTAATGGTTAGTTTTCTTGACAATATTGAGAATGTTGACAAAAGCATTGAATTTCTTGAACAGACTTTAACGGTGTTAGGTTTGATTCTGGAAAAAATTGAAGATCGTGAAGGATTGAAGAACCTTGTGTTGAAAGGAAAGAACAAAAAATGCTTGGATTCAATGGTTCTCGTTTTACAAAAAGGAAGCAACAATTCAAGAATCGTAACTGGCAGAGTTTTGAAATTCATCGCTATAGACGCTGAATCAGAGCTTCTAATAGCCGAGAACGAAGCTTTGTTAACGGAATTGCTGAAATTATCTTCGCCGGAGAATGATTCGAAGCTGATTGAAAATTGCTTATCGTGCTTAATAGCAATCTCAAAACCGAAACGGAACAAACAGAAACTGGTGAAAATTGGAGTAATGAAGATTTTATCAAAGCTACTTAAAGAGTCTAATACAAGCGTGACGGTGGTGGAGAAGGCGTTGAAGCTGGTGGAAACAGCGTCGTCAACGAGTGAAGGAAGAAGAGAGATGTGTGAAGACGCGGCGTTTGTGGCGGCGATACTGAATAAGATTAGGAATGTATCGAACGTTGCGACGGAGCACGCCGTAACGACGCTGTGGAGTGTTTGTTATCTGTTTCGAGATCAGAAAGCACAAGAAGCGGTTACGATGGCGAATGGATTAACGAAGATATTGTTGCTAATACAGAGTAATTGTTCTCCACAAGTTCGACAAATGTGTACGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCGTGTCTTTCTTCTTATGATACCAAAACTTCACATATTATGCCATTTTGA 1248 0.4167 MVRERVVDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILPTKDFVPNRTLHSLIQIWTDSVHHRLEPVVSPSVLSNEQLLQTITDLASSGLNRFGLITKVIRFAQDSDQNRTFLPKLDGFIPLMVSFLDNIENVDKSIEFLEQTLTVLGLILEKIEDREGLKNLVLKGKNKKCLDSMVLVLQKGSNNSRIVTGRVLKFIAIDAESELLIAENEALLTELLKLSSPENDSKLIENCLSCLIAISKPKRNKQKLVKIGVMKILSKLLKESNTSVTVVEKALKLVETASSTSEGRREMCEDAAFVAAILNKIRNVSNVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLIQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYDTKTSHIMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06803 415 PANTHER WDSAM1 PROTEIN 12 403 IPR045185 GO:0061630
Mepo3g06803 415 FunFam RING-type E3 ubiquitin transferase 5 85 - -
Mepo3g06803 415 SUPERFAMILY ARM repeat 124 397 IPR016024 -
Mepo3g06803 415 CDD RING-Ubox_PUB 14 66 IPR045210 -
Mepo3g06803 415 SUPERFAMILY RING/U-box 11 82 - -
Mepo3g06803 415 Gene3D - 99 404 IPR011989 -
Mepo3g06803 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 85 IPR013083 -
Mepo3g06803 415 Pfam U-box domain 13 81 IPR003613 GO:0004842|GO:0016567
Mepo3g06803 415 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Mepo3g06803 415 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06803 Mepo-Chr3 81780650 81782346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06803 8 415 U-box Gene Family AT5G64660 50.704 1.49e-137 398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06803 3 81780650 81782346 Mepo3g06803 3 81780650 81782346 ECH
Mepo3g06803 3 81780650 81782346 Mepo2g04398 2 52515907 52517587 ECH
Mepo2g04398 2 52515907 52517587 Mepo3g06803 3 81780650 81782346 PCT