Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06775 ATGTCGGTGCCAATGGCAATTGCCCTCTCTGGCCAACTTCTTCTTGGACAACCTGTTATGGTAAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTACTGGAGCTGCTGGTGTGGTAGGACCATATGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACCGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACCGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATATAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATATTGGAAGTCAAGATACAACAACAAAATCCGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTACTGCAAGCATTGGTTTACCCATGAATGGGTTGGCTCCTGCTCAGCCGGCTATTAATTTGCCTATTGGTAATCCTGGATTAATACATCCTGGATTAATATCCGCACCCGGACTAGCTCTACCAACTCAAATTATGCCCACCCAAGTGGCTGAACCTGTCGGAACCCCCAGCAAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACCGAACCAGATTTTGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTTGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTCGCACGCAAAATGATTTCAGCTATATACATGGAACCTCATGAGTATGAAGTCAAGTTTAAAAGGGAACTTTGA 966 0.44 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVSSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGITASIGLPMNGLAPAQPAINLPIGNPGLIHPGLISAPGLALPTQIMPTQVAEPVGTPSKCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMEPHEYEVKFKREL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06775 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Mepo3g06775 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Mepo3g06775 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 301 IPR000504 GO:0003723
Mepo3g06775 321 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 245 IPR029123 -
Mepo3g06775 321 SMART rrm1_1 228 305 IPR000504 GO:0003723
Mepo3g06775 321 SMART rrm1_1 52 125 IPR000504 GO:0003723
Mepo3g06775 321 SUPERFAMILY RNA-binding domain, RBD 51 311 IPR035979 GO:0003676
Mepo3g06775 321 Gene3D - 47 142 IPR012677 -
Mepo3g06775 321 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 318 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mepo3g06775 321 FunFam Splicing factor, CC1-like protein 222 321 - -
Mepo3g06775 321 Gene3D - 222 320 IPR012677 -
Mepo3g06775 321 FunFam Splicing factor CC1-like 35 140 - -
Mepo3g06775 321 NCBIfam splicing factor, CC1-like family 1 315 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mepo3g06775 321 CDD RRM3_RBM39_like 226 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06775 Mepo-Chr3 81548854 81551792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06775 53 124 Eukaryotic Initiation Factors Gene Family AT4G34110 41.096 1.46e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06775 K13091 - gmx:100802446 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04367 2 52248161 52254215 Mepo3g06775 3 81548854 81551792 ECH
Mepo3g06775 3 81548854 81551792 Mepo3g06775 3 81548854 81551792 ECH
Mepo2g04367 2 52248161 52254215 Mepo3g06775 3 81548854 81551792 PCT