Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06772 ATGTGTATGTTAAAGGTGGCGAATTCAAAAGACAAAGTTGTTATCAAAAGTGAATTCAATGATCATCCTACATTGTCAACTGAAATGATATTTCCAGGTTTGAATAGGGAAAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATCGTTTCTGGAGATGTTCCAACCCAGAGTGACGGTGATATACCTCATCATAATAGTGCAATTGAAGGAAGGGTTGCTTTTGCAACAAATATCAATAACAACATGTCTTCTCCTTCTACAACACAATCTTTGTCTTCTCCTTCTTCTTCATCTAATTATGCTACTAGTTCTTCTCTCAAGAGAACTAGGGAAGATGATAGCTTTGTTGGTGATTTCCAATTCCTCGGTGGTTCCTCCCCTGCTTTGCCAACAACTATTGCAGAAAGTTCAAGCATTAATAGGACAGCAACAAGAATAACAAGAGAAATGGGGAATGCAGTATATGAATATAGAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGCAAAGAGAAAATACAGAGGAGTTCGACAGAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCATTCAAAGCAGCTAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTTACTCTTCGTAACCCTCCAGTACCAGCTGCTGCTGCTGCTACTACTACTACTACTCAATGGAACGTTTCGAATACACCGAGTTCAATTGTTTCTATTACAACTTCTACTGATCCTGTTGTTCATACTAGACCTTTTCCTAACTCTTCTCAGCATTCTACAAACTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTCCTCCTGCAAGGAATGTTTATGATGATAATGTGATTATGGCTTCTTCTATGGCTTCTCTTCTACAATCTTCATCATCTTCTGCATTTGCTTCTTCTATGCTGGGCAATACTTCGGTTTCCTCGTTTTATTCTACTCAGTTGCCACCTTGGTCAGCTTCGGATCATACCTCTTCTCCCTCTAGATGA 1083 0.397 MCMLKVANSKDKVVIKSEFNDHPTLSTEMIFPGLNREREMSAMISALTHIVSGDVPTQSDGDIPHHNSAIEGRVAFATNINNNMSSPSTTQSLSSPSSSSNYATSSSLKRTREDDSFVGDFQFLGGSSPALPTTIAESSSINRTATRITREMGNAVYEYRRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRNPPVPAAAAATTTTTQWNVSNTPSSIVSITTSTDPVVHTRPFPNSSQHSTNFYDRFQFSGIPPPARNVYDDNVIMASSMASLLQSSSSSAFASSMLGNTSVSSFYSTQLPPWSASDHTSSPSR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06772 360 Pfam AP2 domain 174 223 IPR001471 GO:0003700|GO:0006355
Mepo3g06772 360 SUPERFAMILY DNA-binding domain 174 232 IPR016177 GO:0003677
Mepo3g06772 360 Gene3D AP2/ERF domain 173 233 IPR036955 GO:0003700|GO:0006355
Mepo3g06772 360 PANTHER DNA-BINDING DOMAIN 105 309 IPR044808 GO:0003700|GO:0009873
Mepo3g06772 360 MobiDBLite consensus disorder prediction 80 107 - -
Mepo3g06772 360 ProSiteProfiles AP2/ERF domain profile. 174 231 IPR001471 GO:0003700|GO:0006355
Mepo3g06772 360 SMART rav1_2 174 237 IPR001471 GO:0003700|GO:0006355
Mepo3g06772 360 MobiDBLite consensus disorder prediction 80 111 - -
Mepo3g06772 360 CDD AP2 174 233 IPR001471 GO:0003700|GO:0006355
Mepo3g06772 360 FunFam Ethylene-responsive transcription factor 2 173 232 - -
Mepo3g06772 360 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700|GO:0006355
Mepo3g06772 360 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06772 Mepo-Chr3 81519909 81521458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06772 172 236 AP2-EREBP Transcription Factor Family AT5G61890 84.615 5.61e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g06772 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06772 - - mtr:11421690 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06772 3 81519909 81521458 Mepo3g06772 3 81519909 81521458 ECH
Mepo2g04365 2 52209061 52210580 Mepo3g06772 3 81519909 81521458 ECH