LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g06750	ATGGCTGAAGATAGTCCGCGACTTGGAGGTTTTTCAGCTGGTCTGGCTGTTATATTAAATGGCGACGACAATAAGAAAAAGTTGCCGAATACTAGACTACTTTCTTGTTGTGATGATTTAGGTGAACAGTCGGTGGAAAGAACACTTGAATACGTGTTTGGTCTCCCCAACAGATCGTTGAATTCCTTGGATGGTCCGGTTGACAGTAGTTTTATCCGTTCTGTCATTAAGAATGTTTTTTCACGATATATTGCAAAATCAGGTGATTCTTTTAGTGAAAGAGATATGATATGTGGACCGGATGTTGTAGGCCTAGATGAGTCCAGCATATGTGGTGATATTAAAATCATCAAGTCACCTTTACTTGTCGAAAGCTTGGAAATGTTCAGTAGTGTGAGGGCAAATACATGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCTGGTATACAGCAGATTGGTTGGGCCACTGTTTCTTGCCCTTTCACGGACCATAAAGGTGTTGGTGATGCCGATGATTCGTATGCCTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACGTATGGTCAGTCATGGGTGGTTGGTGATGTCATCGGATGTTGCATAGATTTGGACCGAGACGAAATATTATTCTATAGGAATGGCAATTCACTTGGGGTGGCATTCCAAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATCATCCAGCAATCTCTCTCTCGCAGGGTGAAAGATGTGAATTGAACTTTGGTGCTCGACCCTTCAAGTACGCAATTGAAGGCTACCGTCCTCTTCAGGCTCCTCCCTCTAAGAGCTACTTTGTCACACGATTGCTACAGTGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAACTGAACATTCTTTAGCACAGAAATTGAGAAGAGCAAAGAGGTTTGTTTCATTGGAAGAAATTTTCCGTCCTGTCTCATATGCTATTTGTGAAGAATTATTCTGTATACTTGAAGAAGATGTTGGACAAGCAGAGTATATGGTTTGGGGTCCATTGATGTCCTTCACGTTTGAAGTTTTTGAATTGCATGCACCCCATGACTATTCAAGCATGGATAAAGTAGTTGAAGTCTTGTTACAATTTCAAGGATCACACATGCTGTTTGAAAACATCATAAATGCACTTTCATGCGGTTGCAAAATGGCACAGTTAGTTTTGACTGAATGTCCTTACTCTGGATCATATTGTTACCTAGCACTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAATCACCAGATTTTGAATTTTTGTTTGAAGGTTTTATGTCACAAAAAACTCCAAACAAGCAGGATCTTGACTCCATGATACCTACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATGTTGTGAAGGTAACATGATGTTGGCAACCACAGCTTTGTCGGAGTCAATCAGCAAGATTGAGGAGAAGCATCGGGACCTCTGTCGCTTAGTTATACAATTTATACCGCCTACAACACCTCCACAATTACCTGGAGCAGTATTTAGGACATTTTTACAAAACCTTCTACTGAAGAACAGAGGGGCAGAAAGAAATGTCCCACCGCCTGGAGTTTCTAGCAATTCAGTTCTTGTTTCAATTTATACAGTTGTGCTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTACAAAGCAGATGTTGGTTTCCTTCATAGAGGTGGTCAACAAAGTTTTCCCATACACTTGTTTTTGAAAAATGATCCTCATAGAACTGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCTACGATTGATCATGAAAGGGAAGTAGTTCAATGGGATGAAGGTTGCATGGATAATGAAGAAACCAGAGTGACACATTCAACCAGGCAGAAGCCGTGCTGCTGTTCTAGTTATGATTCTGAATTTTCAAGGAATTTGAAGGTTCCTGCTAAATACCTGGCCAAAGGGTCTCGAGGCCATTGCAGCTCTATTCCAGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATGGGAGTTTGAATGATGAGATAACAGATAAACCCAGTTCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAATTGCACCATCTGAAATCTGTACCCAAGGATACTGATGTTTATATGGATACGCTGCAGGAAGAAGAGCTGCTTGATGCACTGTTATGGCTGTATCAAGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCGTACTACATGACTCATCAGGCACAATCAATCTCCCTATTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGTGGTGAAAAGTTGAAGCATTTGAAAGAAGCTCGTAATGAGTATAGAGAAGAGGTCATTGATTGTGTTCGGCACTGCGCTTGGTATCGTATCTCTTTGTTATCACGATGGAAGCAGCGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGCTGCTACTGGTTCTTAGCAATATGGATTCAGTGTTTATCTACACCCCTGAATATTATCTGGAAGCTTTGGTCGATTGCTTTCATGTGTTGCGGAAGAGTGATCCTCCATTTGTTCCGTCCACAATTTTGATCAAGCGTGGACTTGTTTCATTTGTCACTTTTGTTGTTACTCATTTCAATGATCCAAGGATATCAAGTGCGGATCTTAGAGATCTTCTTCTCCAGTCTATATCCGTCCTGGTGCAGTACAAAGAGTATTTGGCAGTTTTTGAGAGCAACGAGGCAGCCAACCAAAGGCTGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATCCCGGTGACGAACATACTCCTGCGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAACGGGGAATCATCTTCATCATCAATTCTTTTCCAAAAGTTGCTAAAAGAAGCTTGCATAAATGATGAAGGATTATTTTCATCTTTTCTAAACCGTCTATTTAATACACTTAGCTGGGCCATGACAGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAGAAGTATCAGGTAATGGAGTTTCAGCAAAAGAAATGTGGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTTTGGAGTTCTGCACTCATGAGATTCCTCAAGCATTCCTGTCTGGACCAGAAACAAACCTCAGGAGGTTAACTGAGTTGGTTGTATTTATCTTGAATCACATGACTTCTTCAGCCGATGCTGAATTCTTTGAATTGTCCCTTAGACGGCATAGCCAATCTTCAGAGAAAGTAAATCGAGGCATGATATTGGCGCCTCTCGTAGGGATCATGTTAAATATATTGGATGCTACTAAGTTGGCAGAGTATCGAGAGAACAACGATCTTGTCGATGTTTTGCTAAGCATGGACTGTCCAGATACTGTTCTTTATGGTTTCCAATTTCTTGTGGATTATAACTGGGATGGATCGTGTCGAGGGGGAGCTTATGTGGCAAAATATAAGCAGTTAGAAAATTTCTTGACTCTTCTTGCTTGCCGCCTTATGTCTGAACGTGATGAAGTGGACAGTGTTGTAGATACAGAGCTTGATGATAACTTATGCTGCATATGTTACGCTTGTGAAGCGGATGCCCAGATTGCACCTTGTTCCCATAGGTCTTGCTATGGCTGTGTAACTAGGCATCTTTTGAACTGTCAGAGATGTTTCTTTTGCAATGCTACAGTGACAGATGTTAGCAGAACTAATGAGAAGACAGGCTAA	3801	0.4141	MAEDSPRLGGFSAGLAVILNGDDNKKKLPNTRLLSCCDDLGEQSVERTLEYVFGLPNRSLNSLDGPVDSSFIRSVIKNVFSRYIAKSGDSFSERDMICGPDVVGLDESSICGDIKIIKSPLLVESLEMFSSVRANTCVWKGKWMYEVMLETSGIQQIGWATVSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDVIGCCIDLDRDEILFYRNGNSLGVAFQGIRKMGPGFGYHPAISLSQGERCELNFGARPFKYAIEGYRPLQAPPSKSYFVTRLLQCWSRLLDMHSVERTEHSLAQKLRRAKRFVSLEEIFRPVSYAICEELFCILEEDVGQAEYMVWGPLMSFTFEVFELHAPHDYSSMDKVVEVLLQFQGSHMLFENIINALSCGCKMAQLVLTECPYSGSYCYLALACHLLRREELMVLWWKSPDFEFLFEGFMSQKTPNKQDLDSMIPTVWWPGSCEDACCEGNMMLATTALSESISKIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQNLLLKNRGAERNVPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSYKADVGFLHRGGQQSFPIHLFLKNDPHRTDISRLGGSYTHLSKLHSTIDHEREVVQWDEGCMDNEETRVTHSTRQKPCCCSSYDSEFSRNLKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQLHHLKSVPKDTDVYMDTLQEEELLDALLWLYQVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACGEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYTPEYYLEALVDCFHVLRKSDPPFVPSTILIKRGLVSFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKEYLAVFESNEAANQRLPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSILFQKLLKEACINDEGLFSSFLNRLFNTLSWAMTEFSVSVREMQEKYQVMEFQQKKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELVVFILNHMTSSADAEFFELSLRRHSQSSEKVNRGMILAPLVGIMLNILDATKLAEYRENNDLVDVLLSMDCPDTVLYGFQFLVDYNWDGSCRGGAYVAKYKQLENFLTLLACRLMSERDEVDSVVDTELDDNLCCICYACEADAQIAPCSHRSCYGCVTRHLLNCQRCFFCNATVTDVSRTNEKTG	1266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g06750	1266	Pfam	E3 ubiquitin-protein ligase RKP N-terminus	1	131	IPR045737	-
	Mepo3g06750	1266	SUPERFAMILY	RING/U-box	1194	1256	-	-
	Mepo3g06750	1266	CDD	SPRY_RNF123	131	259	IPR035773	-
	Mepo3g06750	1266	ProSiteProfiles	B30.2/SPRY domain profile.	83	263	IPR001870	-
	Mepo3g06750	1266	FunFam	E3 ubiquitin-protein ligase RNF123	1205	1262	-	-
	Mepo3g06750	1266	PANTHER	RING FINGER AND SRY DOMAIN-CONTAINING	31	1264	IPR045129	GO:0004842
	Mepo3g06750	1266	SMART	SPRY_3	140	262	IPR003877	GO:0005515
	Mepo3g06750	1266	FunFam	E3 ubiquitin-protein ligase RKP	112	286	-	-
	Mepo3g06750	1266	Gene3D	-	102	289	IPR043136	-
	Mepo3g06750	1266	Pfam	SPRY domain	142	260	IPR003877	GO:0005515
	Mepo3g06750	1266	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1206	1263	IPR013083	-
	Mepo3g06750	1266	CDD	RING-HC_RNF123	1212	1255	-	-
	Mepo3g06750	1266	MobiDBLite	consensus disorder prediction	698	721	-	-
	Mepo3g06750	1266	MobiDBLite	consensus disorder prediction	705	720	-	-
	Mepo3g06750	1266	SUPERFAMILY	Concanavalin A-like lectins/glucanases	99	265	IPR013320	-
	Mepo3g06750	1266	Pfam	Ubiquitin elongating factor core	728	951	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g06750	1193	1258	C3H Transcription Factor Family	AT1G62370	36.364	7.05e-06	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g06750	K12169		-	gmx:100800617	2279.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo3g06750	3	81252128	81262697	Mepo3g06750	3	81252128	81262697	ECH