Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06714 ATGGCTCTCCGTAAACGCCTCCACCGCCTTTTGCTTGATGCAGATTCAACTTCAACAACTGCATCAGGTTACATGAATAGGTCAAGGGAGCCTTTCACAACCCCGGGTGATTCAAATTTTGACACCAACATGGTGTTTATCTTGGCAGCTTTACTTTGTGCGCTTATTTTTGCATTAGGACTCAACTCAATTGTAAGGTGTGTTCTAAGATGTAGCAACAGGTATGCTTTTGAGACACCAGATGAAGCTATGGCTCGTTTAGCATCAAAGGGTTTAAAGAAGAGTGCACTGCGTAAGATCCCTGTAGCTGTTTATGGTTCTGGAGGTAGTAGTACTAGTTTTGCAGCCACAGATTGTCCAATTTGTCTTGGGGAGTTTATGGATGGAGAGAAAGTTAGAGTTCTACCGAAATGTAACCATGGATTCCATGTAAAATGCATAGATGCTTGGTTGCTTTCACACTCCTCCTGTCCTACTTGTAGACAGTCTTTGATTGAATATCCAACTAGTTGTGGAGCTGCATCTGTTCTGTGA 534 0.427 MALRKRLHRLLLDADSTSTTASGYMNRSREPFTTPGDSNFDTNMVFILAALLCALIFALGLNSIVRCVLRCSNRYAFETPDEAMARLASKGLKKSALRKIPVAVYGSGGSSTSFAATDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDAWLLSHSSCPTCRQSLIEYPTSCGAASVL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06714 177 CDD RING-H2_EL5-like 118 161 - -
Mepo3g06714 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Mepo3g06714 177 SUPERFAMILY RING/U-box 118 167 - -
Mepo3g06714 177 Pfam Ring finger domain 118 161 IPR001841 -
Mepo3g06714 177 PANTHER RING-H2 FINGER PROTEIN ATL78 16 167 IPR044602 GO:0016567|GO:0016740
Mepo3g06714 177 SMART FANCL_C_2 115 174 - -
Mepo3g06714 177 SMART ring_2 119 160 IPR001841 -
Mepo3g06714 177 FunFam RING-H2 finger protein ATL72-like 83 165 - -
Mepo3g06714 177 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06714 Mepo-Chr3 80907215 80908991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06714 7 169 C3H Transcription Factor Family AT3G10910 55.233 2.51e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06714 - K19040 mtr:25489830 339.347