Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06709 ATGGTCGAGATCAGGAAAAGGAAGATCACGTCCAAGTTGATTGAAAATGCTACTCTAAGAAAGATTCGCTACACGAACAGAGTGAAAGGATTGTTCACTAAAATGGAGCAGGTGAAAACCCTATGTGGTGTTGAAGCATGTGCAGTTGTATTTGGTCCAGGTGATTCAAGACCCTCAGTGTGGCCATCTCATGATGTGGCCAAAAAATTAATACAAGAGTTTGGATCTATGCCAGAGTCAGTACAATCGAGAAATATGACTGACCAACTGACTTATGTGGAGGAAAAAGGAAAAAAGCTTGATGCTGACCTTGCCAAGATCAACAAATATAACGAAGAGACGCTTTTGAGAGTTTCCATGCATCAAATTTTAAATGAAGGTAAATCTCTTGTTGATTTCGATACTAGTATGAAAAACAACTTGATTGAATTTATACTTGAAAAAATTAAGATCGTCAGAAAGAGAACCGATTATTTTGAAAAGGCGGTGTTTCCTCTTAATAAACCTCCCTCTCTGCCACTACCCGTGTCCTGCGCTTTAGACGATGACAATGTGGCAGATATTGGGATAAACACAAATAGTGAAGTTTTGAATCAACAACCATTGTTAGATTTGGCAAAGCAAGCTGATCAAATGGGTGATGGTTTTAATCCTAGTGATGGTGGCGGTGTTGGTGATATATTGGTTAATCAAGAGAATTTTGAAGGTTTTTATAACAATATTTACAGTAACATGGAGATACCGCCACACACATATTTTGGTGGTGGTGTTGATGTGGCATTTTCTCAAGGTATTATGGAAGATTTTGATAGTAGCATAGAGATAACATCAGATAAATATCTCAGTGGTAGTGTTGATGATAAGTTATTCCTTAGAGGAAATTCGGGGGGGTTTGATACCTATTTAAGTAGAAACATGGAGATACCGCCACATGTACGTCATAACGATGTTGTAGATAGCATGCCTCCTCAAGGCAATTTTGGAGGGTTTGATCATAATACAAGTGATAACATGTGGACTCCACCACATGAAAATTCTAGTGGCAATGTTGATGCGTTGTTTCCTCAGTTCAGTCTTAGAGGTCAAAACAACTTTGAAAGTTTTGATAAAAATACAGGAAGCAACACGTGGACACCATCGCATGAAAATCCCAGTGGTGATGTTGATGCGTTGATTTTTACACAAAATTCTGGAGGTCAATGCAACTTTGAATGTTTTGATAACATTACATATCACAACATGTGGGCACCATCACATGAAAATCCAAGTGGCGGTGTTGACATGTTTATTCCTAATGTCGAAACAATGGGTCAAGGAAGCTTTGGAGGTTTTGATAACAACACAGATAGCGAAATGGAGATATCACCTCATGCAAATCATAGTGGTGGTAATGATGCTTTGCTTCCTCAATGGAATTTCACAAGTTCTGATAACAATGTAGGCAACGACATGGAGGTATCGTTGTATGCAAATTCAAGTGATGACGTTGATTTGTTATTTCATCAAGGCAATTTTGAAGGCTTTGATAACAATACAAGCAGCAACATGTGGATTCCACCACACAAAAATCATAGAGATGGTGATAATACGAGGATTCGCAGCCAAAACGACATTGGGGAAAATCTTGATGAATATGGCATGGGGAGTGCCAATGCAAACTCTATTGATAATAACTATGGAACCAACTTCAATCAAGGTCTGCCTTTTGAATGA 1713 0.3841 MVEIRKRKITSKLIENATLRKIRYTNRVKGLFTKMEQVKTLCGVEACAVVFGPGDSRPSVWPSHDVAKKLIQEFGSMPESVQSRNMTDQLTYVEEKGKKLDADLAKINKYNEETLLRVSMHQILNEGKSLVDFDTSMKNNLIEFILEKIKIVRKRTDYFEKAVFPLNKPPSLPLPVSCALDDDNVADIGINTNSEVLNQQPLLDLAKQADQMGDGFNPSDGGGVGDILVNQENFEGFYNNIYSNMEIPPHTYFGGGVDVAFSQGIMEDFDSSIEITSDKYLSGSVDDKLFLRGNSGGFDTYLSRNMEIPPHVRHNDVVDSMPPQGNFGGFDHNTSDNMWTPPHENSSGNVDALFPQFSLRGQNNFESFDKNTGSNTWTPSHENPSGDVDALIFTQNSGGQCNFECFDNITYHNMWAPSHENPSGGVDMFIPNVETMGQGSFGGFDNNTDSEMEISPHANHSGGNDALLPQWNFTSSDNNVGNDMEVSLYANSSDDVDLLFHQGNFEGFDNNTSSNMWIPPHKNHRDGDNTRIRSQNDIGENLDEYGMGSANANSIDNNYGTNFNQGLPFE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06709 570 CDD MADS_SRF_like 6 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo3g06709 570 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Mepo3g06709 570 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 54 IPR002100 GO:0003677|GO:0046983
Mepo3g06709 570 Gene3D - 17 100 IPR036879 GO:0003677|GO:0046983
Mepo3g06709 570 ProSiteProfiles MADS-box domain profile. 4 52 IPR002100 GO:0003677|GO:0046983
Mepo3g06709 570 SUPERFAMILY SRF-like 6 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06709 Mepo-Chr3 80855636 80857348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06709 6 176 Type I MADS-box Gene Family AT1G65300 30.994 1.78e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g06709 SRF-TF 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06709 - - mtr:120579700 968.378