Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06704 ATGTATCATCTCTTTCCAACTTCTCTCCTTTCCTTTTGTTTCGTTTCTCGTCACTACCAACAACACCGCAGCCGCAGAACACCATTCTCAAAGTGGTTGGGTTCGATGGAGAAGGAGAAAGAGAAAGAGTTGGTCGAATTGTACGAAGCGGCGAAGAAAGCGGCGGATGCTTCCACCTCCACCGATAATACTCCCAGCGAAGAAACCCGTTGCCTCGATGCGCTTGAACAGCTCAAGAATTTTCCGGTCAATTACAAAATTCTCGTCAATACCCAGGTGGGAAAACATCTTAAAACTCTCACCAAGCATCCCAGGGAGAACATTCGGGCTTTTGCTGTTGACTTAATTGCGATATGGAAAGACGTAATTATCAAGGAAACAAGTAAAAATAAGAACGGGGCCTCTGATTCTAAGGTTGAGTCAACGAATGGGGAGAGAGCTAAAGGTGGGAAATTGCAAAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAAGTGCCAAGGTGGAGAAAGTTAATGGGAATGGTTCATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTGATCGTACCTCGAACATCAAAGTGAAGGAGGAAAAACCAGTCTCTGCGGCAAAGAAAATTTCATCCAGCACTGCTGCTCCACCAAAGCTGAAGACTATGATCAAATCTAACGATTCAGCGCGAGACAAAATAAGGGAACTTCTCCGAGATGCTTTAGCTAAGGTCTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTGAATGCATGTGACCCTATTCGTGTGGCAGTGACAGTGGAGTCCGTATTATTTGAAAACTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCCTTAATGTTTAATCTTAAGGATCAGAAGAACCCAGATTTCCGGAGAAAAGTTCTGCTTGGTACTGTTGAGCCACAGCGGCTGGCCGTCATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAAGAGAATGAGAAAATCGAGCAGAAAGCTTTGTTCGACTGTGAGCGTGGACTTCAGCCAAAAGCTACTACTGATCAATTTAAGTGTGGTCGGTGTGGACAAAGGAAAACCACCTATTACCAAATGCAAACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1215 0.4428 MYHLFPTSLLSFCFVSRHYQQHRSRRTPFSKWLGSMEKEKEKELVELYEAAKKAADASTSTDNTPSEETRCLDALEQLKNFPVNYKILVNTQVGKHLKTLTKHPRENIRAFAVDLIAIWKDVIIKETSKNKNGASDSKVESTNGERAKGGKLQKSPSVKVEKGESAKVEKVNGNGSSKLSSGNVKAQNVDVKIEKTDRTSNIKVKEEKPVSAAKKISSSTAAPPKLKTMIKSNDSARDKIRELLRDALAKVFEEADEDMMDEVNACDPIRVAVTVESVLFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGTVEPQRLAVMSSAEMASEQRKQENEKIEQKALFDCERGLQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06704 404 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 51 404 - -
Mepo3g06704 404 NCBIfam transcription elongation factor S-II 54 404 IPR006289 GO:0003676|GO:0005634|GO:0006368
Mepo3g06704 404 Coils Coil 226 246 - -
Mepo3g06704 404 ProSiteProfiles Zinc finger TFIIS-type profile. 362 402 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mepo3g06704 404 PIRSF TFIIS 39 404 IPR035100 -
Mepo3g06704 404 Pfam Transcription factor S-II (TFIIS), central domain 233 350 IPR003618 GO:0006351
Mepo3g06704 404 ProSiteProfiles TFIIS N-terminal domain profile. 46 126 IPR017923 -
Mepo3g06704 404 SUPERFAMILY Zinc beta-ribbon 344 402 - -
Mepo3g06704 404 CDD Zn-ribbon_TFIIS 357 403 - -
Mepo3g06704 404 Gene3D - 333 404 - -
Mepo3g06704 404 ProSitePatterns Zinc finger TFIIS-type signature. 366 401 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mepo3g06704 404 ProSiteProfiles TFIIS central domain profile. 236 359 IPR003618 GO:0006351
Mepo3g06704 404 SMART mid_6 238 342 IPR003618 GO:0006351
Mepo3g06704 404 Coils Coil 326 346 - -
Mepo3g06704 404 CDD TFIIS_I 48 123 - -
Mepo3g06704 404 SMART TFS2_5 47 125 IPR003617 GO:0005634
Mepo3g06704 404 Gene3D - 205 332 IPR036575 GO:0006351
Mepo3g06704 404 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 33 138 IPR035441 -
Mepo3g06704 404 SUPERFAMILY Elongation factor TFIIS domain 2 223 334 IPR036575 GO:0006351
Mepo3g06704 404 MobiDBLite consensus disorder prediction 129 183 - -
Mepo3g06704 404 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 66 138 IPR035441 -
Mepo3g06704 404 Pfam Transcription factor S-II (TFIIS) 364 402 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mepo3g06704 404 SMART Cys4_2 364 403 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mepo3g06704 404 FunFam Probable Transcription elongation factor S-II 333 404 - -
Mepo3g06704 404 Pfam TFIIS helical bundle-like domain 74 122 IPR017923 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mepo3g06704 TFIIS_M 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06704 K03145 - gmx:100811982 568.155