Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06631 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCGCTGATATAAGAGAATCAGAGATTGAAGATCTGTTCTACAAGTATGGCCGCATAATGGAAATTGAATTGAAGGTTCCTCCTCGCCCACCATGTTATTGTTTTGTCGAGTTTGACAATGCTCGAGATGCTGAAGATGCAATTAGGGGTCGTGATGGTTACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCTCATGGAGGCAGAGGGCCATCATCAAGTGACCGACGTGGGTATGGTGGTGGCGGCGGCGGTGGTGGCAGAGGAGGTGGCGGTGATGGTGCTGGTGGGGGCCGTTTTGGCATCTCTCGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAGGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAGCTGGATGACACCGAGTTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGGAAGTATGAGAGCAGTCGTTCAAGAAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCGAAAAGGGCCAAAAGTAGATCTTTGGAGCGATCTGTGTCTAGGTCACGGTCTCTTTCCAGATCCAGATCAAGATCAGCATCACCAATCAAGCCTGCCAGGCCAAGATCACCATCACGTTCAGCGTCTCCGCGATCACCACGCCAGGTATTTAAAGCTGATTATATGATTCAGAATTTCCGAAGGTTTTTTTCATAA 846 0.4775 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRAKSRSLERSVSRSRSLSRSRSRSASPIKPARPRSPSRSASPRSPRQVFKADYMIQNFRRFFS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06631 281 FunFam serine/arginine-rich splicing factor SR34A-like 2 122 - -
Mepo3g06631 281 SUPERFAMILY RNA-binding domain, RBD 6 190 IPR035979 GO:0003676
Mepo3g06631 281 CDD RRM2_SF2_plant_like 123 198 - -
Mepo3g06631 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mepo3g06631 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
Mepo3g06631 281 FunFam serine/arginine-rich splicing factor SR34A-like 123 200 - -
Mepo3g06631 281 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 261 - -
Mepo3g06631 281 MobiDBLite consensus disorder prediction 81 113 - -
Mepo3g06631 281 SMART rrm1_1 124 197 IPR000504 GO:0003723
Mepo3g06631 281 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mepo3g06631 281 Gene3D - 2 118 IPR012677 -
Mepo3g06631 281 Gene3D - 123 200 IPR012677 -
Mepo3g06631 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mepo3g06631 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Mepo3g06631 281 MobiDBLite consensus disorder prediction 219 233 - -
Mepo3g06631 281 MobiDBLite consensus disorder prediction 200 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06631 Mepo-Chr3 80220650 80225694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06631 2 207 Eukaryotic Initiation Factors Gene Family AT4G34110 22.791 7.54e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06631 K12890 - gmx:100800653 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06631 3 80220650 80225694 Mepo3g06631 3 80220650 80225694 ECH