Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06630 ATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTTCCAGTGAGAATTTGGACAACAGTGTTGTTTCATCGGACTCAACTGAGGTTGTTGAGAAATCCAAACCCATAACCGATCAGAATCTGAACACCAACACCGTTAACACCAACGTTGTTGGTGTGATCAATCATCAACAACAAGACAGTGTACCAAATGGTAACCATGGTTTCATGGCTCATCAAATGGGTCAGATGCATGGAAATGGGGTTCAGAATCAGCATTTGGTTGATGGGTATGGTGGGAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAGTTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTGCCACCTTCACTGGTTACTAATTATCATGGCTACTTAGCTGCTGGTGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAATAACAATTTTATGCTTCAGAATAATTTTGGAAATGCTAATGCTAATGCTACTGCTAATAATGGACAGATTAACAGAAGGAGGAAGAATGGCTATAATAATGCGAAACGAAGAGTGTATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGAGTATGCGGGGATCCCAATTCCATTCTTCGGTTTGCATTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTGCCTTCAAAGACTGCTATTGCACCTGTTAATCCAACTTTTTTGCCCAGGTCTGAAGATGAAAGAGAGATGTGCACCAGAACAATTTATTGCACAAATCTCGACAAGAAGCTTACTCAAGCAGATGTCAAGCACTTCTTTGAATCTATCTGTGGAGAGGTTCAACGTCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTGGAGTTTGCAGTGGCTGAGAGTGCAATTGCTGCACTGAGCTGTAGTGGTGTGGTTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCAAAGACACCAGTCCGAGCTCGTGCAGTTCGTACTCCCATGCACTGA 1164 0.4399 MAVAENVGTKIDSSSENLDNSVVSSDSTEVVEKSKPITDQNLNTNTVNTNVVGVINHQQQDSVPNGNHGFMAHQMGQMHGNGVQNQHLVDGYGGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAAGAAGPNAGFGYPNNNFMLQNNFGNANANATANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARAVRTPMH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06630 387 SUPERFAMILY RNA-binding domain, RBD 290 380 IPR035979 GO:0003676
Mepo3g06630 387 SMART rrm1_1 300 371 IPR000504 GO:0003723
Mepo3g06630 387 SMART rrm1_1 203 273 IPR000504 GO:0003723
Mepo3g06630 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 277 IPR000504 GO:0003723
Mepo3g06630 387 FunFam Polyadenylate-binding protein-interacting protein 11 166 279 - -
Mepo3g06630 387 MobiDBLite consensus disorder prediction 8 33 - -
Mepo3g06630 387 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 109 380 - -
Mepo3g06630 387 CDD RRM2_CID8_like 295 376 IPR034825 -
Mepo3g06630 387 CDD RRM1_CID8_like 200 279 IPR034823 -
Mepo3g06630 387 MobiDBLite consensus disorder prediction 1 33 - -
Mepo3g06630 387 Pfam Ataxin-2 C-terminal region 111 125 IPR009818 -
Mepo3g06630 387 Gene3D - 286 381 IPR012677 -
Mepo3g06630 387 Gene3D - 159 279 IPR012677 -
Mepo3g06630 387 SUPERFAMILY RNA-binding domain, RBD 187 279 IPR035979 GO:0003676
Mepo3g06630 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 375 IPR000504 GO:0003723
Mepo3g06630 387 FunFam Polyadenylate-binding protein-interacting protein 10 293 371 - -
Mepo3g06630 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 267 IPR000504 GO:0003723
Mepo3g06630 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 368 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06630 Mepo-Chr3 80209484 80215094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06630 201 363 Eukaryotic Initiation Factors Gene Family AT1G34140 27.545 7.85e-12 64.3