Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06629 ATGGCTGTTGCTGAAAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACAACGTTGTATCATCTGACTCAACTGAGGTGGAGAAATCGAAACCTAGGACCGATCAGGATGTGAACAACAACGGTGTGTTCAACCATCAACACCAAAATGGTAATTATAGCTTCAAGACTCATCAAATGGGTCAGATGCATGCCAACGGTGTTCAGAACCAGCAGTTTATGATGAGCAATGATGGATATGTGATGAATGGTATCAGAAATGGTGAGAATGGGGGCGAGAGTTTTAAGCGTGAAATGAGGGATTTGGAAGAGTTGTTGTCAAAGCTGAATCCAATGGCTGAGGAATTTGTGCCTCCGTCGCTAACAAATAATCATGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTAACAATTTTATACTTCTTAATAATTATGCTAATGCTAACGGCCAAACTAACCGTAGGAGGAAGAACGGCTACACTACTAATGGAAAGCGAAGAGCGAATCATAAAGTGGATATGGAGAAAAGAGAAGAGATGATCAGGAGGACTGTTTATGTGTCTGATATTGATCAGCTGGTTACCGAAGAGCAGCTGGCATCTCTCTTTCTTAATTGCGGCCAGGTTGTTGATTGTCGGGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCCTTCATTGAGTTTACAGATGAAGAGAGTGCAAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGGTATTACCCATTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCGACATTTTTACCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAACATTGACAAGAAGCTGACTCAAGCAGATGTGAAACACTTCTTTGAATCTATCTGTGGAGAGGTCCATCGACTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTTGCAGTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGCAGTGGCGTGATTTTGGGTGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCTGTCCGTGCTCGTTCTTCTCCTCGTAGTCCATGA 1131 0.4456 MAVAENVGAKIGSSSQNLDNNNNNVVSSDSTEVEKSKPRTDQDVNNNGVFNHQHQNGNYSFKTHQMGQMHANGVQNQQFMMSNDGYVMNGIRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNFILLNNYANANGQTNRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVRARSSPRSP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06629 376 CDD RRM2_CID8_like 285 366 IPR034825 -
Mepo3g06629 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Mepo3g06629 376 FunFam Polyadenylate-binding protein-interacting protein 10 283 361 - -
Mepo3g06629 376 CDD RRM1_CID8_like 190 269 IPR034823 -
Mepo3g06629 376 Gene3D - 276 372 IPR012677 -
Mepo3g06629 376 Gene3D - 153 269 IPR012677 -
Mepo3g06629 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Mepo3g06629 376 Pfam Ataxin-2 C-terminal region 112 126 IPR009818 -
Mepo3g06629 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 353 IPR000504 GO:0003723
Mepo3g06629 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Mepo3g06629 376 MobiDBLite consensus disorder prediction 1 53 - -
Mepo3g06629 376 SMART rrm1_1 193 263 IPR000504 GO:0003723
Mepo3g06629 376 SMART rrm1_1 290 361 IPR000504 GO:0003723
Mepo3g06629 376 SUPERFAMILY RNA-binding domain, RBD 280 373 IPR035979 GO:0003676
Mepo3g06629 376 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 110 371 - -
Mepo3g06629 376 MobiDBLite consensus disorder prediction 9 31 - -
Mepo3g06629 376 SUPERFAMILY RNA-binding domain, RBD 182 268 IPR035979 GO:0003676
Mepo3g06629 376 FunFam Polyadenylate-binding protein-interacting protein 11 154 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06629 Mepo-Chr3 80188366 80192831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06629 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 9.81e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06629 - - gmx:106794116 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06629 3 80188366 80192831 Mepo3g06629 3 80188366 80192831 ECH