Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06606 ATGATGGAGGAAGAAGAGAATATTCATGAAGGATATAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACAGCACAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGTCAGAATCAAAGTTGGAACCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCCAGACAAGTTGCCATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCTCATGATGGAGGAAGAGAAGCAAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAAATGCAAGTTTGAAGCAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTATTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCATGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATCTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA 738 0.3577 MMEEEENIHEGYKGKNVESMSCLETAQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNKCKFEATKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPMTTTLEKWYNVDPCGILDQSCNSSQWLDFWT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06606 245 SMART HOX_1 36 97 IPR001356 GO:0003677
Mepo3g06606 245 Pfam Homeobox associated leucine zipper 93 133 IPR003106 GO:0006355|GO:0043565
Mepo3g06606 245 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677
Mepo3g06606 245 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677
Mepo3g06606 245 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Mepo3g06606 245 CDD homeodomain 40 94 IPR001356 GO:0003677
Mepo3g06606 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 171 IPR045224 GO:0003700
Mepo3g06606 245 Coils Coil 85 133 - -
Mepo3g06606 245 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677
Mepo3g06606 245 Pfam Homeodomain 39 91 IPR001356 GO:0003677
Mepo3g06606 245 Gene3D - 19 98 - -
Mepo3g06606 245 MobiDBLite consensus disorder prediction 19 40 - -
Mepo3g06606 245 FunFam Homeobox-leucine zipper protein ATHB-7 17 93 - -
Mepo3g06606 245 MobiDBLite consensus disorder prediction 136 157 - -
Mepo3g06606 245 SUPERFAMILY Homeodomain-like 22 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06606 Mepo-Chr3 79953407 79955032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06606 25 245 Homeobox Transcription Factor Family AT2G46680 41.841 1.59e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo3g06606 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06606 K09338 - gmx:100793260 344.354