Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06572 ATGGGTAGTTTCAGTGGAGAAGAAGATTGTCGGTTTTTTGATGCTGAAGAGGATGTTGTGTCTATTAGAGATGTAAATTCCGATGATGATGATGATAAAGGGGTGTCTGTGTCTGTTGAATTTGATTATGAAGCGTGGATTCGGAGTCCAAAGAGTGTGAGAGAGCGTAGAAGGAGGTTTATGAAGAGCATGGGAATGAGTATAGATGGAATTGTAGTTGAAAATTCATTGGATTTTGAGGAGGAAGAGATTATGGAAAGAGTAAGAGATAGTAGTAGTTCTGAAGAGGAATTCAGTTCATGTCGGCTGTCAATGTCTTGTTGCTCTAGTGTGAGTTCTTCGGAGGAATTTGGTTTAGTGGATATTAATAACTTGCCATGTCAAGATGGAAATTTAGAGAGAAGAATGAGGGCTAATGAGAAGATGAGTGATTGTTCAAATCAGTTGGTAGTTGCTAAGGAATCTGAGGATTGTGCAAATGTCTCTGGGGCGTCTCATTGTCAAGGATTGATAGATAGAGAGTTTGAGGATACGGATGGTGATGTGGTTACTAGAACGATAAATAGGGTGAGAAGGGGTTGGTTGAGAAGATTGAGATCGATGACGTGCATGGTTGATAATGGTAGAGAAGAAGGGAGTTATGCAGTCTCAGGGTGTAGGCTTCAGAGAGTAAAGGTCCGTCAATGTAGGAAAAAAATGAAGGAACTTTCATCGCTTTACTTGAGGCAAGATATCCAAGCGCATGAAGGTGCAATTTTGACCATGAAATTTAGTCCTGATGGGCACTATCTGGCCACGGGTGGTGAAGACGGGGTTGTTCGGGTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAATTCACATTCCAGAAATTGACCCCTCAAGCATTTACTTTACGGTGAATAATCTCTCTCAGTTGACACCATTGTTTATGGATAAGGAAAAACTTGGTCAACTGAAGAGCATGAGAAAAACTGCAGATTCAGCTTGTGTCGTTTTCCCGCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCATGAGTTCTATGGGCATAGAAGTGATGTTTTGGATCTCTCTTGGTCAAAGAAGAATTATCTTCTTTCATCGTCAGCTGACAAAACTGTCCGACTATGGCAAGTGAATCATGACCATTGCTTGGAAGTGTTTTCACACAGTAATTATGTGACATGCATACAATTCAATCCTGTTGATGAAGATTATTTCATTAGCGGATCCATAGACGGAAAGGTGCGCATCTGGACGATTCCTGATTCTCAGGTTGTTGATTGGACTGATGTCAGAGACATAGTGACTTCAGTATGTTATCGGCCGGATGGGCAGGGAGGGATTGTTGGATCTTTGGCAGGAAATTGTTGGTTTTATAAAATATCAGATAATCAGTTGCAGTTAGATTCCCAACTATGTTTAATTGGTAAAAAGAAAATTCCTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCTCAAGATTCTAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTCAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTTAACACAGGGCGTCCAATGTGTGCATCGTTTACTTCAGACGGGAAACATATTTTATCAGCATCCGAGGACTCTAATGTATATCTATGGAACGTTAATCAGGAAGAGTCTAATAATCCCATGAAATCTAAGAAAATTAGGTCTTGTGAGCGGTTTTCCTCAAACGCATCAGTTGCGGTACCTTGGCATGGTTTGAAACCTCAAATCACCGAAAATGAACAATTGAATGTCTTGAATGAAAAGTCACCACAAGTTGTTATGCAATTACACCCCAACCCACCTGCTTCTTTCTCTCTGAACCAAGATTTTTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACCTGGCCCGAGGAGAAGCTTCCTGTTTCGGGCTCCAAGACCAAAAAAACATCATTGCTGCGAAAGTCCGAATACAAATTCTTGAAATCTTCGTGCAAGAGTACCAACAGCGCTCATGCGTGGGGTATGGTCATTGTGACTGCAGGCTGGGACGGGAAGATAAAAACATTCCAAAATTACGGGCTACCTGTACCTGTTTGA 2112 0.4134 MGSFSGEEDCRFFDAEEDVVSIRDVNSDDDDDKGVSVSVEFDYEAWIRSPKSVRERRRRFMKSMGMSIDGIVVENSLDFEEEEIMERVRDSSSSEEEFSSCRLSMSCCSSVSSSEEFGLVDINNLPCQDGNLERRMRANEKMSDCSNQLVVAKESEDCANVSGASHCQGLIDREFEDTDGDVVTRTINRVRRGWLRRLRSMTCMVDNGREEGSYAVSGCRLQRVKVRQCRKKMKELSSLYLRQDIQAHEGAILTMKFSPDGHYLATGGEDGVVRVWQVVEEDRCNEIHIPEIDPSSIYFTVNNLSQLTPLFMDKEKLGQLKSMRKTADSACVVFPPKIFRLLEKPLHEFYGHRSDVLDLSWSKKNYLLSSSADKTVRLWQVNHDHCLEVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWTIPDSQVVDWTDVRDIVTSVCYRPDGQGGIVGSLAGNCWFYKISDNQLQLDSQLCLIGKKKIPGRGITGFQFLPQDSNKVMVTCADSQVRILDGLNVICKYKSLNTGRPMCASFTSDGKHILSASEDSNVYLWNVNQEESNNPMKSKKIRSCERFSSNASVAVPWHGLKPQITENEQLNVLNEKSPQVVMQLHPNPPASFSLNQDFFLESFPKGSATWPEEKLPVSGSKTKKTSLLRKSEYKFLKSSCKSTNSAHAWGMVIVTAGWDGKIKTFQNYGLPVPV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 389 IPR001680 GO:0005515
Mepo3g06572 703 Gene3D - 73 289 IPR015943 GO:0005515
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 431 IPR001680 GO:0005515
Mepo3g06572 703 Gene3D - 481 696 IPR015943 GO:0005515
Mepo3g06572 703 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Mepo3g06572 703 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Mepo3g06572 703 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Mepo3g06572 703 Pfam WD domain, G-beta repeat 532 555 IPR001680 GO:0005515
Mepo3g06572 703 Pfam WD domain, G-beta repeat 386 421 IPR001680 GO:0005515
Mepo3g06572 703 Pfam WD domain, G-beta repeat 246 276 IPR001680 GO:0005515
Mepo3g06572 703 Pfam WD domain, G-beta repeat 344 379 IPR001680 GO:0005515
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 278 - -
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 382 - -
Mepo3g06572 703 SMART WD40_4 424 463 IPR001680 GO:0005515
Mepo3g06572 703 SMART WD40_4 342 380 IPR001680 GO:0005515
Mepo3g06572 703 SMART WD40_4 515 555 IPR001680 GO:0005515
Mepo3g06572 703 SMART WD40_4 383 422 IPR001680 GO:0005515
Mepo3g06572 703 SMART WD40_4 474 514 IPR001680 GO:0005515
Mepo3g06572 703 SMART WD40_4 238 277 IPR001680 GO:0005515
Mepo3g06572 703 SUPERFAMILY WD40 repeat-like 238 694 IPR036322 GO:0005515
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 564 IPR001680 GO:0005515
Mepo3g06572 703 ProSitePatterns Trp-Asp (WD) repeats signature. 542 556 IPR019775 -
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 423 - -
Mepo3g06572 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 278 IPR001680 GO:0005515
Mepo3g06572 703 PANTHER WD REPEAT DOMAIN 44 7 700 IPR040324 -
Mepo3g06572 703 Gene3D - 340 480 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06572 Mepo-Chr3 79639708 79643332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06572 245 403 U-box Gene Family AT2G33340 22.460 5.70e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06572 - - gmx:100817209 941.028