Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06552 ATGACCATGATATCTCCAGCTCAGCCACCAATGCATCACCATCAAGCCCAGCCCCCATATTCTCCACTAATATCAAAGCCATCATCATCTGGAGTAGACTTCAGCCCACCCCTAATAGCAATGGTAGTTGTTGTCGCAGCCGCATTCGTCCTCGTAACCTACTCCCGCCTCATCACCCGCCATCTTTCCCCTCCCATCCACCGTCTCATCCAACGCTTCCACCGCCCTCCTCCCTCCTCCTCCTCTTTAGGCGACATCGAATCCCTTCAATACGACTCAACATCTTTCGAAACACCGCTCACTTATGGCTTAGACGAATCTATCATCAAAACAATCCCATTCTTCATTTACACAACAAAATACGAACAAGAATCTCGCCGTGACTGCGCCGTTTGTTTACTTGAATTCGAAGATCACGATTATGTTCGTACTCTTCCTCTCTGTTCCCATACTTTCCATCTTGACTGCATTGATGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGCTCTCTTCTTCTATGTGAGTCTCCGTTCAGACCTCTCATGGCTGCTAGAATTCGTCCTTCCTTTCATGACCAAACTAATGTACTTCATATTGATACGCCGGCGCCGGAGATTACTCCTCATTCTCCTGTTAACGGCGAAGAGAATCGGTATACCAGACGGGAGGATTTTCTGTTGAAACGCTCTTATTCTTTTGGTTTTGAACGGAGTTTACCGTCGGAGAGGATGGTTATTGATCCTGCCACAACCTCACCGTGGCGGTATCGAAGAGGGAGTAACAGTTTCTGGAGTAAAAGACCGTCGCCGTTTGGTTCATTAGGGAAGTCTAGAGTGTTTTCGTTCAGATACTACAGAGGAATGAAATCACCGTTTTTCCGGCGGAGGGGATTCTTTCCGTTATCGGAGTCAAGTGTTAGATACGCCGGCGACGGAGGGAGTTCATGGCGGAGGAGTAAATCAATAGCGAGTCCAATGTTTTCAAGATCATCAGCGGCGGTATTCTCGTCGAGCCGGCTGAGATGTGGTGATCCAGAGGCGTTACTATCGCCGGAGAGATTTAACCGGCGACGATGA 1083 0.4857 MTMISPAQPPMHHHQAQPPYSPLISKPSSSGVDFSPPLIAMVVVVAAAFVLVTYSRLITRHLSPPIHRLIQRFHRPPPSSSSLGDIESLQYDSTSFETPLTYGLDESIIKTIPFFIYTTKYEQESRRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLCESPFRPLMAARIRPSFHDQTNVLHIDTPAPEITPHSPVNGEENRYTRREDFLLKRSYSFGFERSLPSERMVIDPATTSPWRYRRGSNSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYAGDGGSSWRRSKSIASPMFSRSSAAVFSSSRLRCGDPEALLSPERFNRRR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06552 360 CDD RING-H2_EL5-like 128 171 - -
Mepo3g06552 360 PANTHER RING-H2 FINGER PROTEIN ATL16 13 195 IPR044600 GO:0016567|GO:0016740
Mepo3g06552 360 MobiDBLite consensus disorder prediction 1 22 - -
Mepo3g06552 360 SMART ring_2 129 170 IPR001841 -
Mepo3g06552 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 175 IPR013083 -
Mepo3g06552 360 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Mepo3g06552 360 FunFam RING-H2 finger protein ATL65 97 175 - -
Mepo3g06552 360 Pfam Ring finger domain 128 171 IPR001841 -
Mepo3g06552 360 SUPERFAMILY RING/U-box 113 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06552 Mepo-Chr3 79480908 79484384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06552 23 359 C3H Transcription Factor Family AT3G18930 49.871 2.28e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06552 - K19041 gmx:100806115 464.536