Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo3g06534 | ATGATTATTAAGCGGAACTTGAAATCTCAAATGCCGAGCTTGAAACGGTGTAAACTCGCTGACTCAGTTGGTGATGATGAAGAGTGTTCTTATGCTCGCAAGAAGAAAAAAACTAACGGCTCTTATTATCCTTTAAATCTTCTAGGTGATGTTGCTGCTGGGTTAATTCCGGTGAGTTTTCATGGTTTGTTGAGTAGTGGTGTATCGGAGAAGGGATTCTCTACGTCGTGGTGCAGTCAAGCTCCGTGTTCCCCTGGTGAAGTTGAATCCAATGCGAAGGATGAAATGGTTACGGTGAAGAAGAAACGAGTTCAAAGACCACCACTAGTGAGAACTTCGAGAGGGCGAGTTCAGGTTCTTCCTTCGCGGTTTAATGACTCTGTTCTTGATAATTGGAAGAAGGATGGTAAGACTAGCTTGCGTGATTTTGAAGTTGAAGATAAATTTGAATGCAAGAAGGACAGGGTAGTACAGAAAATTTGCAATGGCAATGTTAGAAAAGGGAGAAACAATGAGAAAATTGGTTATAAGCAACGTAAGTATTCGGCATTGTGGAGGGATGATGATGTTGGTATGAGTACGAGATATAAGAGTTTTGGTAGAAGGAAGAGTTCAGCTTTGGATGTAGATGAAGTTGATTTGATGATGGGTAGTGATGATGATGAAGTTGATTTGAATGAGACTAAAGGAGAGAAGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAAGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTTTGAAACAGGCACCTGAGCTGGTCTTGAGGTCTGTTATAATTGATGCTGCTTGTGTCATGTTTCTTGGCAATGCAGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTATGGATTATGTGGACAGGTTTCAACAGCAGCCTGAATTGAGTAATTATAGCCCCTCTGAATTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAAGGCTTTACAGAGAAGTTGATGGATGATATAAATGCTGCAGCTGGTGACACTGGTTATGATGATACTATTCTGAAATCCTCCTTGCGCGAAGTCCGTGGTTCAAACCAGTATGGAGGAGCAGGAAAGCATTTTCTTAAACAGGATTTATTTGATAAGAAAGACTCAAGATCATGCGAAGCCTGTGGATTGGCTCTTCCTTACAAGATGTCAAAGAAAAGTAAGGGTTTGACTCCTAATGGTCAACTCCTATGTAAAACATGTGCAAGGTTAACGAAATCAAAACATTATTGTGGCATATGCAAGAAAGTATCAAATCATTCGGATAGTGGAAGCTGGGTACGCTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGTGACAAAATTTCTAGTAACCATTTCAAGGATCTTGAAACCACCGATTATTTCTGCCCTACATGCAGAGGGAAGTTTGACTTTGAGTTATCTGATTCAGAATACACAAAGCCAAAAGTCAGATCGAGCAGAAACAGTGAGCAGCTAGTGCTTTCAAATAAGGTCAATGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCGCTTAGTGAATGGGAACGACACACAGGTTCCAAGTTAAGAGATTGGAAAACAAGTATTACTGTGAAAGACTCTAGGCTACCTCTGGAACAATGGATGCTGAAGGTTGCAGAATGTCATGCTAAAACTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAGGAAAGGAAGCAGAAGTTGCTTACCTTCTTGAAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGCAAAAAATGTTCGAGACTTTACATCTTGGGTCTGTAAGGCCTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTGACACTTTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTCGCTAGTGATGAGAAGATGGAACCTGCTTTGGGTATTCTTAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATACATGGTTCGTGCACACAGTGCTGCAAATGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATTGTTTGAAGAAAAATGGAAAGCAGACGACAAAAATGGTTTCGTATTGTGCTTACCACAGAGCTCCAAATCCCGACAATGTTTTGATTTTGCAAACCCCTCTTGGGGTAATTTCAACCAAAAGCCTTCTTCAAAAGAGAAAAGCTGGGTCAAGGTTAATCTCGTCTACCAGAATAGAGAAAGAAGACACTCCTATTGATATCACTGAGCATGACCCATTCTCTGCTGCTCGGTGTCAGATCTTTAAAAGAACAAATCTTACCAGAAAGAGAGCAGCGGATGAAGCCATTTTTCATCTAGCGAGGGGTCACTGCCACCATCCTTTAGATGCAATACAGAGTTTAAATACATACAGAGCATTAGTAGAGGAGCCTCAAGCTTTCTCTTCTTTCAGAGAACGCCTTTACCACTTGCAGAGGACCGAAAATGGACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGCGAACAAGTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCACGCTATAGAGCAGAAGGGAAAGACTGCTACGTGAGTTAA | 2940 | 0.418 | MIIKRNLKSQMPSLKRCKLADSVGDDEECSYARKKKKTNGSYYPLNLLGDVAAGLIPVSFHGLLSSGVSEKGFSTSWCSQAPCSPGEVESNAKDEMVTVKKKRVQRPPLVRTSRGRVQVLPSRFNDSVLDNWKKDGKTSLRDFEVEDKFECKKDRVVQKICNGNVRKGRNNEKIGYKQRKYSALWRDDDVGMSTRYKSFGRRKSSALDVDEVDLMMGSDDDEVDLNETKGEKKDGLYGPEDFYASDIVWAKAGRKEPFWPAVVIDPLKQAPELVLRSVIIDAACVMFLGNAGNENQRDYAWVKHGMIFPFMDYVDRFQQQPELSNYSPSEFQMAIEEAFLADQGFTEKLMDDINAAAGDTGYDDTILKSSLREVRGSNQYGGAGKHFLKQDLFDKKDSRSCEACGLALPYKMSKKSKGLTPNGQLLCKTCARLTKSKHYCGICKKVSNHSDSGSWVRCDGCKVWVHAECDKISSNHFKDLETTDYFCPTCRGKFDFELSDSEYTKPKVRSSRNSEQLVLSNKVNVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRDWKTSITVKDSRLPLEQWMLKVAECHAKTLVSVKPKKPSLKERKQKLLTFLKEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLKKNGKQTTKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKRKAGSRLISSTRIEKEDTPIDITEHDPFSAARCQIFKRTNLTRKRAADEAIFHLARGHCHHPLDAIQSLNTYRALVEEPQAFSSFRERLYHLQRTENGRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSVADLREARYRAEGKDCYVS | 979 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06534 | 979 | SUPERFAMILY | FYVE/PHD zinc finger | 438 | 494 | IPR011011 | - | |
| Mepo3g06534 | 979 | Pfam | PHD-zinc-finger like domain | 687 | 799 | - | - | |
| Mepo3g06534 | 979 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 685 | 800 | IPR034732 | - | |
| Mepo3g06534 | 979 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 978 | IPR025780 | - | |
| Mepo3g06534 | 979 | Pfam | PHD-finger | 646 | 680 | - | - | |
| Mepo3g06534 | 979 | SUPERFAMILY | FYVE/PHD zinc finger | 632 | 696 | IPR011011 | - | |
| Mepo3g06534 | 979 | Gene3D | SET domain | 853 | 979 | IPR046341 | - | |
| Mepo3g06534 | 979 | Pfam | PWWP domain | 246 | 338 | IPR000313 | - | |
| Mepo3g06534 | 979 | SMART | PHD_3 | 633 | 680 | IPR001965 | - | |
| Mepo3g06534 | 979 | SMART | PHD_3 | 439 | 491 | IPR001965 | - | |
| Mepo3g06534 | 979 | SMART | PHD_3 | 744 | 800 | IPR001965 | - | |
| Mepo3g06534 | 979 | CDD | PHD_TCF19_like | 440 | 490 | - | - | |
| Mepo3g06534 | 979 | CDD | ePHD_ATX3_4_5_like | 688 | 799 | IPR041955 | - | |
| Mepo3g06534 | 979 | ProSiteProfiles | Zinc finger PHD-type profile. | 631 | 682 | IPR019787 | - | |
| Mepo3g06534 | 979 | Pfam | PHD-finger | 439 | 491 | IPR019787 | - | |
| Mepo3g06534 | 979 | PANTHER | PHD FINGER PROTEINS | 62 | 506 | - | - | |
| Mepo3g06534 | 979 | ProSiteProfiles | PWWP domain profile. | 244 | 313 | IPR000313 | - | |
| Mepo3g06534 | 979 | SUPERFAMILY | Tudor/PWWP/MBT | 237 | 341 | - | - | |
| Mepo3g06534 | 979 | Gene3D | - | 239 | 345 | - | - | |
| Mepo3g06534 | 979 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 625 | 682 | IPR013083 | - | |
| Mepo3g06534 | 979 | ProSitePatterns | Zinc finger PHD-type signature. | 634 | 679 | IPR019786 | - | |
| Mepo3g06534 | 979 | ProSiteProfiles | Zinc finger PHD-type profile. | 437 | 493 | IPR019787 | - | |
| Mepo3g06534 | 979 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 433 | 493 | IPR013083 | - | |
| Mepo3g06534 | 979 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 683 | 802 | IPR013083 | - | |
| Mepo3g06534 | 979 | CDD | PWWP_AtATX3-like | 243 | 347 | - | - | |
| Mepo3g06534 | 979 | FunFam | Histone-lysine N-methyltransferase | 621 | 682 | - | - | |
| Mepo3g06534 | 979 | SUPERFAMILY | SET domain | 917 | 976 | IPR046341 | - | |
| Mepo3g06534 | 979 | FunFam | Histone-lysine N-methyltransferase | 683 | 802 | - | - | |
| Mepo3g06534 | 979 | CDD | PHD_ATX3_4_5_like | 633 | 679 | IPR042011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo3g06534 | Mepo-Chr3 | 79323557 | 79331705 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06534 | 634 | 799 | C2H2 Transcription Factor Family | AT3G14740 | 33.526 | 3.19e-20 | 91.7 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Mepo3g06534 | zf-HC5HC2H_2 | 3.6e-27 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo3g06534 | - | - | aprc:113853254 | 1630.54 |