Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06528 ATGAAGACTCCCAATCCCAAACTCATCCTAATTTGTTTCCTTTTCCTCTTCAACCTTAATCAAACACAAGTAGTGGCACTAGCAACCATAGAAACATGCTTAGACACTGTTTGCCACACGAATGAACCACTAATACGATTCCCATTCCATATAGAAGGAAAACAAGCAAATACATGTGGATACCCAGGGTTCAAAGTATTATGCGATGAAAATGAAAAAAGCCAAACACTCCTCAATCTACCTTATATGGAAAATCTTGGTATCCAAAAAATAAACTATCCCAAACAAGAACTTTTTGTGAATGATCCCAATAACTGTCTCCCAAAACTACTTCTCTCACTCAACCTCTCTACCTCTCCTTTTGATGCCGTTTACTATCAACAATTTACCTTTTTTAATTGCTCATACAACTTGGAATACCTTACCTCTAGGTACAAACCAATAGCTTGTCTTAGTGATTACTCCAAGTACAACGTTTTTGCAACACCTTCACTTACTGTGTTTGTGCACTTGTCTTCTGTTTGTGATTTGGTTGATACCGTTAACGTGCCGGTTCAATCGCCGTTTTTTGATCAAGTGTTGTCGTCTGAACTAAATGATGATCTCCGGTTGTCGTGGAATTCGCCACCGTGTGGAAGGTGTGAGTCTCATGGTGGACGTTGTGGCTTCAAAAATAACTCTACTTTTGAAATTGCTTGTTACAATGTCCCTCCACGACAAGGGATTTCCCGTGGTGCAAGTTATGCCATAGCCATATGTGCAGGGGTGCCAGCTTTGTTGTGCTTCATTTCACTATTAAGCTGGATATGTAGCAAGTTCAGAATTGGAACCCATGGTTGGATTTGGGCACGTGAGACAGTTGCAGATTTTGAGTCTCTTCTTGATCATGAATACACCAACACTTCAGGTCTTGATAAGCCAACAATTGAATCCTACCCAAAAATAGTGATAGGTGATGACATACACTTGCCAAAACCTAATGGTAAGATATGTCCAATATGCTTGTCAGAATATATGCCTAAAGAGACGGTGAAAACTATGCCAGAATGTGAACATTGCTTTCATGCACAATGCATTGATGAATGGCTTCCACTGAATGCCTCGTGCCCAATTTGTAGAACTTCTCCTCCAAGGTTACCATCACAAGCGAGAGGTGGTAATGACCACAATACTTAA 1176 0.4031 MKTPNPKLILICFLFLFNLNQTQVVALATIETCLDTVCHTNEPLIRFPFHIEGKQANTCGYPGFKVLCDENEKSQTLLNLPYMENLGIQKINYPKQELFVNDPNNCLPKLLLSLNLSTSPFDAVYYQQFTFFNCSYNLEYLTSRYKPIACLSDYSKYNVFATPSLTVFVHLSSVCDLVDTVNVPVQSPFFDQVLSSELNDDLRLSWNSPPCGRCESHGGRCGFKNNSTFEIACYNVPPRQGISRGASYAIAICAGVPALLCFISLLSWICSKFRIGTHGWIWARETVADFESLLDHEYTNTSGLDKPTIESYPKIVIGDDIHLPKPNGKICPICLSEYMPKETVKTMPECEHCFHAQCIDEWLPLNASCPICRTSPPRLPSQARGGNDHNT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06528 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 378 IPR013083 -
Mepo3g06528 391 SMART ring_2 331 372 IPR001841 -
Mepo3g06528 391 Pfam Wall-associated receptor kinase C-terminal 180 234 IPR032872 -
Mepo3g06528 391 Pfam Ring finger domain 330 373 IPR001841 -
Mepo3g06528 391 CDD RING-H2_EL5-like 330 373 - -
Mepo3g06528 391 SUPERFAMILY RING/U-box 312 377 - -
Mepo3g06528 391 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Mepo3g06528 391 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 376 IPR046948 -
Mepo3g06528 391 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06528 Mepo-Chr3 79274671 79277032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06528 31 376 C3H Transcription Factor Family AT2G46495 35.143 5.13e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06528 - - gmx:100818969 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06528 3 79274671 79277032 Mepo3g06528 3 79274671 79277032 ECH