Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06506 ATGGATGAGAGCTTATATGATATATTTGAAGACAGAACAGAATTTGGAAACAGCGATGATCTCTTCGCCATTTTGGAGAGTCTAGAAGATTTCACTGATTTTCCTCTCATCAATCAAGCTGAAGCTGCTACTCCAACATCAAGAATGTTGTCTCAAAAATCAACCTCTTCGCTACAAGATTCTGAGACTGAACTTGAAACTGAACCCAAAAGGAAGAGACAGAAGCTTACACCATCTTTGCTTGAGGAACAGATTAACAGTGTTGATGGACAACAAAGGGTTTCTCATATTACTGTGGAGCGCAACAGAAGAAAGCAAATGAATGAGCACTTGTCTGTTTTAAGGTCACTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGTGTGGTTGATTACATCACAGAGTTGCAACAACTACTCCAAGCCCTTGAAGCCAAGAAACAAAGAAAAGTATACAGTGAAGTTCTAAGTCCAAGATTAGTTCCAAGTCCAAGACCTTCACCACTAAGTCCAAGAAAACCACCTCTAAGTCCAAGACTAAACTTGCCAATTAGTCCAAGAACTCCACAACCAACTAGCCCTTACAAGCCAAGAATGCAACAAAGTTACATTGCACTATCACCTCTTGATCCATCACCCACTAGTTCCTCTACTTCCTCGGTCAATGATAACATCAATGAGCTTGTTGCTAATTCAAAGTCTCCTATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTATTTCTCAAAGAATTCCAGGACAAGCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTCCATGTTAACATTAATAGTACTTCTGATGATACCATGTTGAACTCCTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCTGAAGAACTTGCTCAACAAATCCAGCAAACATTCTGCTAA 969 0.3932 MDESLYDIFEDRTEFGNSDDLFAILESLEDFTDFPLINQAEAATPTSRMLSQKSTSSLQDSETELETEPKRKRQKLTPSLLEEQINSVDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYITELQQLLQALEAKKQRKVYSEVLSPRLVPSPRPSPLSPRKPPLSPRLNLPISPRTPQPTSPYKPRMQQSYIALSPLDPSPTSSSTSSVNDNINELVANSKSPIADVEVKFSGPHVLLKTISQRIPGQALKIISALEDLALEILHVNINSTSDDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06506 322 MobiDBLite consensus disorder prediction 63 78 - -
Mepo3g06506 322 FunFam Transcription factor SPEECHLESS 83 157 - -
Mepo3g06506 322 SMART finulus 97 148 IPR011598 GO:0046983
Mepo3g06506 322 MobiDBLite consensus disorder prediction 167 199 - -
Mepo3g06506 322 MobiDBLite consensus disorder prediction 42 78 - -
Mepo3g06506 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Mepo3g06506 322 Coils Coil 135 155 - -
Mepo3g06506 322 PANTHER TRANSCRIPTION FACTOR FAMA 4 321 IPR044283 GO:0003700|GO:0010052
Mepo3g06506 322 CDD bHLH_AtFAMA_like 95 165 - -
Mepo3g06506 322 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Mepo3g06506 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 163 IPR036638 GO:0046983
Mepo3g06506 322 Gene3D - 83 156 IPR036638 GO:0046983
Mepo3g06506 322 MobiDBLite consensus disorder prediction 164 203 - -
Mepo3g06506 322 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06506 Mepo-Chr3 79073384 79076070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06506 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 54.366 1.62e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g06506 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06506 K20558 - gmx:100777437 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06506 3 79073384 79076070 Mepo3g06506 3 79073384 79076070 ECH