Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06504 ATGGAAAAACAGAGTAGTAAGAGTATCCTATGCAAATACACAGAACACGAAACTGTTACAAAAAAACTCATCACAACAACAAAGAAAAACAGTAACAACAACAATACAACCTTAAACCCAAGAGTTGTAAGAATATCTGTTACCGACCCAGATGCAACCGACTCATCTAGTGATGAAGAAGGACAAAGACAAACCTTCAGAAACAGAACAAAACGTTATATAAACCGTATTGAAATTGAAACCACTGCAAAAACTGTTGTCAGCAGAAAAAGACCCGCCGGAGAAACATCAACGGTACGACGGCCGGCGAAGATTCCGGCAGTCAACAACGGTAAAAAGTTCCGTGGTGTACGGCAGAGACCATGGGGAAAATGGGCTGCTGAGATTCGAGATCCTGCACGGAGGGTTCGTCTTTGGTTAGGTACGTTTGAAACTGCAGAAGAAGCTGCTATGGTTTATGACAATGCCGCCATTAAGCTTCGTGGACCAGACGCTTTAACAAACTTCATCACACCGCCGCAGAAAGAAGATATTCCGGTAGAACCTTCCACCGTGAAACCTGAAATGAAATCAGAAATGAAAGTTGTTGTTGAAGCTGATGTTGAAGGTGAAGCTTCTGGACTTGGTAACTCCGGTTATGATTCCGGTGAAGAAATTTGTGTTCCACTTTCTTCTCCAACTTCAGTTTTAAATTTCCGGAGTAACTCCGGCGAAGAGGAACAAAGTGAAGCTTGTGAAGTTTTCAGAGACTGTCAAGGTGAGACAACAACAAATTTGTTCGATGAAACTGCGCCATTTCTTCAACAAGACATGCCTTGTTGGGATGATGTGTTCAACTTCCAAACACCAGAGTTTCCTATGTTGTTTGAAGATGATCATAACAAAATGATGTTTGAAGGAAGTACAACGCCGTTTTTGTTTGATGAAGATTTAAGTGACAGCATTGTTCTTGCTGACTCACTCATAGATTTTGACAAAGCATGTTTTCCTTCACCTTCTTCATCTTCTTCTTCTTCTTCTACTACATCTTTGTGTCAAGTGGATGATTTCTTTCAAGACATTTTGTTAGGATCAGATCCTCTTGTTGTGCTTTGA 1095 0.4091 MEKQSSKSILCKYTEHETVTKKLITTTKKNSNNNNTTLNPRVVRISVTDPDATDSSSDEEGQRQTFRNRTKRYINRIEIETTAKTVVSRKRPAGETSTVRRPAKIPAVNNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFITPPQKEDIPVEPSTVKPEMKSEMKVVVEADVEGEASGLGNSGYDSGEEICVPLSSPTSVLNFRSNSGEEEQSEACEVFRDCQGETTTNLFDETAPFLQQDMPCWDDVFNFQTPEFPMLFEDDHNKMMFEGSTTPFLFDEDLSDSIVLADSLIDFDKACFPSPSSSSSSSSTTSLCQVDDFFQDILLGSDPLVVL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06504 364 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Mepo3g06504 364 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Mepo3g06504 364 MobiDBLite consensus disorder prediction 26 69 - -
Mepo3g06504 364 MobiDBLite consensus disorder prediction 26 43 - -
Mepo3g06504 364 CDD AP2 112 169 IPR001471 GO:0003700|GO:0006355
Mepo3g06504 364 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Mepo3g06504 364 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Mepo3g06504 364 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Mepo3g06504 364 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Mepo3g06504 364 SUPERFAMILY DNA-binding domain 113 169 IPR016177 GO:0003677
Mepo3g06504 364 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Mepo3g06504 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06504 Mepo-Chr3 79020823 79022713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06504 11 288 AP2-EREBP Transcription Factor Family AT4G27950 43.000 2.78e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g06504 AP2 3.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06504 3 79020823 79022713 Mepo3g06504 3 79020823 79022713 ECH