Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06496 ATGTTCCAACAAAGACATAACAATATTAGTAGTAGCGAGCTAGATCAAATGTTACATATGTTATCTTCTCCTAATTCTAATCTCATGCCATTCCCAACAACCTCAATGGACAAATCAAATTCAAAGTGGAAACCACACATTGAAATTGCTCCTAATTGTCCTCGTTGTGCTTCATCAAACACCAAATTCTGTTACTACAATAATTACAGCTTGTCACAGCCACGGTATTTCTGCAAAGGTTGTCGACGTTATTGGACCAAAGGTGGCTCTCTTCGGAATGTTCCTGTTGGTGGTGGCTGCCGCAAAAACCGTCGTGGAAAGGCGGTCAGAAATTCTCAGACCGACCGTCTTTCTGCAAATTATGGCTCTGCTGACGATGAAGATCATCAGCAGAACCAAAACAATGGTTCACGCGATATAGACATGGCTGTTGTTTTTGCCAAATTCTTAAACCAAAATCCAAATAGTACTCATAATGGTGTTGGGGAATTGGAAATTGAGAGTGAGCCTAATAATAATGGGTTGTCTTCTTCTTCCAACAATATTAATAATTTGTCATCAACACCGGAAAGCGTTGAAACAGAGAATGATGCAGTGGTCCAGCCTCAGAAACCTTTTGATGAGGTTAAGAATTATGAAGGTGAACATGAATTGAGTTTGAGTGGGATTGAATATGATCAGTTTGAAGGGTTTCTAGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGCCTGATTCTAATGCTATGAATATGATGATGTCATCTTCATCCAATAATTATACATGGCAACAACCACCACCAATGATGCAAATGGAGTTACCAGGAGAGTTGGAATTGGAATACTCAATGCCATTGCCATTGCCATTGCCATTGAATAATGAGAATGGTACAGTTAATTCCAGTTCTACTACTAGTGTCAATTTAATAAGCGAAAGTTGGAATTCTTGGGATTCTTTTGACCTTTCAACTATGGAAGTCTTCTCTTCAAGTTCAAGACCTTAA 1005 0.3891 MFQQRHNNISSSELDQMLHMLSSPNSNLMPFPTTSMDKSNSKWKPHIEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRNSQTDRLSANYGSADDEDHQQNQNNGSRDIDMAVVFAKFLNQNPNSTHNGVGELEIESEPNNNGLSSSSNNINNLSSTPESVETENDAVVQPQKPFDEVKNYEGEHELSLSGIEYDQFEGFLGVDEDVVQDVLWPDSNAMNMMMSSSSNNYTWQQPPPMMQMELPGELELEYSMPLPLPLPLNNENGTVNSSSTTSVNLISESWNSWDSFDLSTMEVFSSSSRP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06496 334 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Mepo3g06496 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 196 IPR045174 GO:0003700|GO:0006355
Mepo3g06496 334 MobiDBLite consensus disorder prediction 96 135 - -
Mepo3g06496 334 MobiDBLite consensus disorder prediction 112 135 - -
Mepo3g06496 334 MobiDBLite consensus disorder prediction 169 198 - -
Mepo3g06496 334 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Mepo3g06496 334 Pfam Dof domain, zinc finger 51 105 IPR003851 GO:0003677|GO:0006355
Mepo3g06496 334 MobiDBLite consensus disorder prediction 156 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06496 Mepo-Chr3 78939976 78941241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06496 43 155 C2C2-Dof Transcription Factor Family AT3G52440 61.864 1.23e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo3g06496 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06496 - - mtr:11416134 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06496 3 78939976 78941241 Mepo3g06496 3 78939976 78941241 ECH