Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06379 ATGGCGGAGGAGACTTATCCCATGGACATCGACGTCACAGACAAGGGCAAAACCGTCATTGCCGCCGGTAACCCTTCCTTCGGTGGCAAAGCTTCGCTATGGGTTGAAAAGTATCGTCCTCAATCCCTTGACGACGTCGCTGCTCACCGCGACATCGTTGATACAATTGATAGGTTGACTACTGAGAATAGATTACCCCATCTGCTGTTGTATGGTCCTCCTGGAACGGGTAAAACATCGACGATTCTCGCGGTTGCGCGAAAACTATATGGTGCTCAGTATCATAATATGATTTTGGAACTCAATGCTTCAGATGATAGAGGAATTGATGTAGTTAGACAGCAGATTCAAGATTTTGCCAGCACTCAGAGCTTATCATTTGGCGTCAAGCCCTCTGTAAAACTGGTCTTGTTAGATGAAGCAGATGCCATGACTAAGGATGCCCAATTTGCATTACGTAGAGTCATCGAGAAATATACAAAGAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATCCCAGCACTGCAATCAAGATGCACCCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACTGAGAGACTGAAACATGTTATCAATGCTGAAAGGCTTGATGTTCAAGACAGTGGCTTATCTGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCACTGAATATTCTTCAGTCAACTCATATGGCCTCTCAGCAGATTACTGAAGAAGCCGTTTATCTTTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATATTCAGAAAGCTTTAAAAGAATATATGATATGAAAACAAGGAAAGGACTGGCTCTGATTGATATTGTAAGAGAAGTGACAATGTTTGTCTTCAAGATTAACATGCCGCCAGCCGTTCGAGTGCAGTTGGTGAATGATTTGGCTGACATAGAGTACAGATTAAGTTTTGGTTGCAACGATAAGCTTCAGCTTGGATCAGTTGTTGCTTCATTTACACGTGCTAGATCTGCAATGGTTGCAGCTGCTGCATAA 1068 0.4307 MAEETYPMDIDVTDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALIDIVREVTMFVFKINMPPAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTRARSAMVAAAA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06379 355 FunFam Replication factor C subunit 5 27 191 - -
Mepo3g06379 355 CDD HLD_clamp_RFC 191 253 - -
Mepo3g06379 355 CDD AAA 52 190 - -
Mepo3g06379 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 249 IPR027417 -
Mepo3g06379 355 Gene3D - 28 190 IPR027417 -
Mepo3g06379 355 Gene3D - 256 354 - -
Mepo3g06379 355 FunFam Replication factor C subunit 5 256 353 - -
Mepo3g06379 355 Pfam ATPase family associated with various cellular activities (AAA) 68 189 IPR003959 GO:0005524|GO:0016887
Mepo3g06379 355 SMART AAA_5 64 194 IPR003593 GO:0016887
Mepo3g06379 355 Gene3D - 194 255 - -
Mepo3g06379 355 FunFam Replication factor C subunit 5 193 255 - -
Mepo3g06379 355 SUPERFAMILY post-AAA+ oligomerization domain-like 256 346 IPR008921 GO:0003677|GO:0006260
Mepo3g06379 355 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 337 - -
Mepo3g06379 355 Pfam Replication factor C C-terminal domain 256 342 IPR013748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06379 Mepo-Chr3 77852111 77858664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06379 1 354 Core DNA Replication Machinery Family AT1G77470 77.027 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06379 K10756 - gmx:100782652 611.683