Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06375 ATGTCTTCCATAGTCTACAATTTTACTTGGGAAACATATTGTGCCCTTTTAGATGAAGATGAGGTAAGATTTTATCAAACCTTAGAACAAGGGCACATTGGGGATTATATTTGTATTAAGGTTCGTGTTAGACACGAACTATGTGTCAATCCCCCACAATATCCTTCTTTAATATTACCATTTGATTGGGTTTTCTATGCGCAAACCATGTTTGTACCTTATCATGAATTTCATCAAAATAGTCTATTGTACATGCAAACATATTTTTCTAATGCTATCATCCCATATGAGGTGATGTACACATGCATGCCACAAGTAATGACATATATTGATAATGTACGAAACTCTTATCCCAATCCTCATTATGAAAGTCCCCGAATCCGTGTGCTCCCTTTGGTTTTGGATATTTCTGTTCGAATGTTATTTGAGAATCATAATGATTTTGTCACCAACATGGCTGCGTTGGTCAATACAATGGGAGAGACCCAATTTGTTCCTGCAACAAAGGATGCCATTGAATCCCTTGAGAAGGTGAAGGTAGAAGACTGTGACACCATGAAAATGTGTGTTATCTGTCAAGTGGAGTTCAACATTGGCATGGAGGTTACAAAAATGCCTTGTGATCATCTTTATCACCATGAATGCATTGTCCAATGGCTAGAAACTAGTCATATGTGCCCAATGTGTCGTCACCCCTTGCCTACTTCAACTAGTGGCTGA 720 0.3819 MSSIVYNFTWETYCALLDEDEVRFYQTLEQGHIGDYICIKVRVRHELCVNPPQYPSLILPFDWVFYAQTMFVPYHEFHQNSLLYMQTYFSNAIIPYEVMYTCMPQVMTYIDNVRNSYPNPHYESPRIRVLPLVLDISVRMLFENHNDFVTNMAALVNTMGETQFVPATKDAIESLEKVKVEDCDTMKMCVICQVEFNIGMEVTKMPCDHLYHHECIVQWLETSHMCPMCRHPLPTSTSG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06375 239 CDD RING-H2_PA-TM-RING 189 230 - -
Mepo3g06375 239 SMART ring_2 189 229 IPR001841 -
Mepo3g06375 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Mepo3g06375 239 Pfam Ring finger domain 187 230 IPR001841 -
Mepo3g06375 239 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Mepo3g06375 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 234 - -
Mepo3g06375 239 SUPERFAMILY RING/U-box 172 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06375 Mepo-Chr3 77827291 77828010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06375 144 230 C3H Transcription Factor Family AT1G68180 40.217 4.28e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06375 - - psat:127082836 323.168