Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06368 ATGAATTCGCCGTCTGCGCAGTTTGTTTCCTCGAGAAGGATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGCTTCAAAAGCAACGGCAATTTAAGCGCATCCATTCCCTTAATTGATGAGGCGGACTTGAAGTTTGATAGTAGTCAGTCAGAGGATGCTTCTCATGGTATGCTAGGAACATCTAACAAGTATGAGCAAGAAGCTAATAGACCTATTGATAAGATACAAAGGCGTCTTGCACAAAATCGAGAAGCTGCTCGTAAGAGCCGTCTGCGAAAAAAGGCTTATGTGCAGCAGCTAGAATCGAGTCGTTTGAAGTTAGTGCAGCTGGAGCAAGAGCTCGAACGTGTTAGACAGCAGGGAATGTATATGGGTGGTGGATTGGATTCTAATAATATGTGTTTTGCTGGCCCTGTGAATCCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAGAACCGGCAAATCTCGGAAATGAGAAATGCTTTAAACGCGCATATTAGTGACATAGAGCTCAGGATGCTGGTTGATGGTATGATGAACCACTATGCTGAAATCTATCGCATGAAATCTGCGGCTGCAAAAACAGATGTTTTTTATGTGATGTCCGGCATGTGGAAAACAACGGCTGAAAGATTTTTCTTGTGGATCGGTGGATTTCGCCCTTCTGAACTTCTCAAGATTCTTGGTCCAATGATTGAACCATTGACAGAGCAACAACGATTGGATATCGATAACCTTGGACAATCTTGTCAACAAGCAGAAGATGCCCTTTCACAAGGCATGGAGAAACTGCGGCAAACACTTGCTGATAGCGTAGCAGCTGGACAATTCATTGAAGGAACTTATATTCCACAGATGGCTACTGCAATGGAGAAGTTAGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGAAACCTTGCAACAAATGTCGCGAACACTTACAATCCGTCAGTCAGCTCGATGTTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAATCGACCTCGAGAACCTGCTTAG 1092 0.446 MNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASIPLIDEADLKFDSSQSEDASHGMLGTSNKYEQEANRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMGGGLDSNNMCFAGPVNPGIAAFEMEYGHWVDEQNRQISEMRNALNAHISDIELRMLVDGMMNHYAEIYRMKSAAAKTDVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATAMEKLEALVSFVNQADHLRQETLQQMSRTLTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06368 363 CDD bZIP_HBP1b-like 79 131 - -
Mepo3g06368 363 FunFam BZIP family transcription factor 78 127 - -
Mepo3g06368 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Mepo3g06368 363 Pfam bZIP transcription factor 79 117 IPR004827 GO:0003700|GO:0006355
Mepo3g06368 363 Coils Coil 159 179 - -
Mepo3g06368 363 Gene3D - 78 128 - -
Mepo3g06368 363 SMART brlzneu 75 135 IPR004827 GO:0003700|GO:0006355
Mepo3g06368 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Mepo3g06368 363 MobiDBLite consensus disorder prediction 55 71 - -
Mepo3g06368 363 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Mepo3g06368 363 Coils Coil 98 125 - -
Mepo3g06368 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Mepo3g06368 363 SUPERFAMILY Leucine zipper domain 79 119 IPR046347 GO:0003700|GO:0006355
Mepo3g06368 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Mepo3g06368 363 MobiDBLite consensus disorder prediction 53 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06368 Mepo-Chr3 77740439 77743996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06368 1 363 Calmodulin-binding Proteins AT5G65210 67.935 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mepo3g06368 DOG1 9.5e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06368 3 77740439 77743996 Mepo3g06368 3 77740439 77743996 ECH
Mepo2g04309 2 51705886 51709846 Mepo3g06368 3 77740439 77743996 PCT