Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06366 ATGGCCGATCACTCAGAATCAGATACTTCTCCTCTCGTCCCACCTCTTCCTCCCGTCGATCCTTCCTCGATCGACCTCGAAGCCGGTCCTTCTGAACAAATCCAGTGCCGGATTTGTCTCGAAACTGATGGTAGGGATTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTCAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGAGAACCTTGAAATTTCGTTTTTTCGTCACCAGAGATATTTTGTCTATTTTTCTGGCTGTCCAGCTTATTATTACCTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAAAATTGGCTTCGTATTCTCTGGGGTTTTGATAGTGCACTGAGCTTCTATTATATATGCGGAGCCCTATTATTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTTATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGACTGTCATTTGCCAGGCACTCTTTGTTTGTGGACTGATTGCACTGCATGTTTTGAGGGCTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTACTATTCATAATGGCTTTGATTGTTCTGGGACTTTTTACAGTGATTGGGATATTTTACAGTGTATTGGTGGCAACTATGGTGGGTCAACGGATATGGCAACGTCACTATCACATACTTGCTAAAAGGATGTTAACAAAGGAGTATGTTGTTGAAGATGTTGATGGAGAGATGACAGGGTCTGATTGGTCTCCCCCAGCCCTCCCAACTGAGCATGTTCAACAATTGAAAACATTGGGCCTCCTATGA 978 0.4376 MADHSESDTSPLVPPLPPVDPSSIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRSVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAVQLIITSLAYLVYLIDGYQQNWLRILWGFDSALSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCLWTDCTACFEGCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPALPTEHVQQLKTLGLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06366 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 98 IPR013083 -
Mepo3g06366 325 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 324 - -
Mepo3g06366 325 SMART ringv_2 35 84 IPR011016 GO:0008270
Mepo3g06366 325 CDD RING_CH-C4HC3_MARCH 36 84 - -
Mepo3g06366 325 ProSiteProfiles Zinc finger RING-CH-type profile. 28 90 IPR011016 GO:0008270
Mepo3g06366 325 Pfam RING-variant domain 36 83 IPR011016 GO:0008270
Mepo3g06366 325 SUPERFAMILY RING/U-box 31 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06366 Mepo-Chr3 77725527 77730662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06366 1 325 C3H Transcription Factor Family AT2G22120 85.890 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06366 - - gmx:100791777 616.305