Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06305 ATGAAGAGACTCAACAACACCTCAGATTCTTCTTCAACTCCTCTCATCACCATCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAGGAGGAAGGGTGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTAGACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGACTAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGATAACAAAGCTTTTAACAAGGAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAAAGCACAATCAATGTTTTGGTGAAGGAGGAGTTAACCATGCTTGAATCTTGTGATGAAGACAAGCATAACCCATCTTCAGAAACATCAATTCCTAGTTCAGAATCCAAAGATCACTTGGATTATGACTGCATAATCAACAACAATGATGTTGGTATTGGTGAAACTTCTTCACTCTTTCCGGTAGACTTGAAAGACGGTTCTTCGGACAGCGACTCTAGCGCAATTTCTTCCTCCGGGGTCCTTCAAAGTCAGCAGCACCTTTTGTTGTCTCCTGAATCTTCCTCCATGAATTGTTTCCAGTACCAGAAATCTTATCATGTGAAGATGGAGGAGCACAATTTCTTAAGTGCGGATGAGGCGTGCAATTTTTTCTCGGACGAACAAGCTCCAACCCTACAATGGTACTGTCCTGACCAGTGGAGTTAA 909 0.407 MKRLNNTSDSSSTPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEGCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNKAFNKEIKELKSKLGEEEKSTINVLVKEELTMLESCDEDKHNPSSETSIPSSESKDHLDYDCIINNNDVGIGETSSLFPVDLKDGSSDSDSSAISSSGVLQSQQHLLLSPESSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06305 302 FunFam homeobox-leucine zipper protein ATHB-6-like 63 109 - -
Mepo3g06305 302 Pfam Homeobox associated leucine zipper 115 156 IPR003106 GO:0006355|GO:0043565
Mepo3g06305 302 CDD homeodomain 60 116 IPR001356 GO:0003677
Mepo3g06305 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 296 IPR045224 GO:0003700
Mepo3g06305 302 Coils Coil 114 162 - -
Mepo3g06305 302 SMART HOX_1 58 119 IPR001356 GO:0003677
Mepo3g06305 302 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Mepo3g06305 302 MobiDBLite consensus disorder prediction 1 29 - -
Mepo3g06305 302 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Mepo3g06305 302 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Mepo3g06305 302 Gene3D - 54 122 - -
Mepo3g06305 302 MobiDBLite consensus disorder prediction 177 197 - -
Mepo3g06305 302 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Mepo3g06305 302 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Mepo3g06305 302 MobiDBLite consensus disorder prediction 1 23 - -
Mepo3g06305 302 SUPERFAMILY Homeodomain-like 50 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06305 Mepo-Chr3 77143902 77146900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06305 1 302 Homeobox Transcription Factor Family AT4G40060 47.134 3.04e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo3g06305 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06305 K09338 - gmx:100777924 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04215 2 50909891 50912650 Mepo3g06305 3 77143902 77146900 PCT