Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06293 ATGGGCCTCTCAAACTTTCCCTATGCAGCAGAAGGGGTTGTACCTGTGATTGTAATGAACACTGTTCTATCTATGGTTCTATTAAAGAACATGTTTAGATCTATGCTTCAAGTAGTTGGTTGCACATCAACAACTAATTCTTCTTATTCTCCAAATATTATGGAAGAAGAAGAAGAAGAAGAAGTGTACTCCCAAGAGATTAGTAATTCAAGGGAAAGGAGGGTGTCAATAACACAATACAAGTCCTTGTGTTACAACAGGTCCAACATAGCAAGAAGTAGTAGTTGTAGCAATGGATCATGTGGATGGACAACTCCTATGGTAGAGTGTTGTGTTTGTTTGTCTGGTTTTGAAGCAAATCAAGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTCCATAGAGGTTGCTTAGATAAATGGTTTGATAACAAACATAGTACATGTCCTTTATGTCGTTCTATGGACTAA 468 0.3803 MGLSNFPYAAEGVVPVIVMNTVLSMVLLKNMFRSMLQVVGCTSTTNSSYSPNIMEEEEEEEVYSQEISNSRERRVSITQYKSLCYNRSNIARSSSCSNGSCGWTTPMVECCVCLSGFEANQEVSELPCKHFFHRGCLDKWFDNKHSTCPLCRSMD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06293 155 Pfam Ring finger domain 109 152 IPR001841 -
Mepo3g06293 155 SMART ringv_2 109 152 IPR011016 GO:0008270
Mepo3g06293 155 PANTHER - 1 154 IPR044249 -
Mepo3g06293 155 Coils Coil 53 73 - -
Mepo3g06293 155 SMART ring_2 110 151 IPR001841 -
Mepo3g06293 155 SUPERFAMILY RING/U-box 109 153 - -
Mepo3g06293 155 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Mepo3g06293 155 CDD RING-H2_PA-TM-RING 109 152 - -
Mepo3g06293 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06293 Mepo-Chr3 77059522 77060303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06293 1 153 C3H Transcription Factor Family AT2G04240 32.530 5.52e-21 82.0