Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06273 ATGGCATTTGCTACCATACTAGTGTTCCATTTCTTGCTTCTTGCTCCAGTTTTGATTTATTCTTCTCATCACGTTGAAAATCCTGAATCAGTGGTCCAAGAAGTGCAGAAGAGCATCATTGAGAATCAGAACAGAAGAAAACTGGGTTATTATGATGCTTGTGGTACAAACAATCCAATTGATGATTGTTGGAGATGTGACCCGAATTGGGAAAATAACCGCAAGCGTCTAGCAGAATGTGCTATTGGATTCGGTAGACGTGCAATTGGAGGTAAAGATGGCAAATATTACATGGTCATTGACTCAAGTGATGACCCTGTGAATCCTAAGCCAGGAACATTGAGACATGCTGTTATCCAAGAAGAGCCTTTATGGATCATTTTCAAACATGACATGGTGATCAAACTAAAGATGGATCTTCTCATGAATTCTTTCAAAACAATTGATGGTAGAGGTGCAAATGTACACATTGCTGAAGGACCATGTATTAGAATTCAAGAAAAGACCAACATCATAATTCATGGTATACACATTCATCATTGTGTACGAGGTGGTAGTGGCTATGTGAGTGACTCTCCTAACCATCGTGTTAGGAAAGAAAGATCGGATGGTGATGGGATTACAATCTATGGTGCGGCACATATTTGGGTGGATCATTGTTCCTTGTCAAATTGTTTTGATGGTTTGATTGATGTTGTTCATGGATCAACGGCTGTTACCATTTCTAATAATTATATGACACGTCATAACAAAGTTATGCTCTTTGGTCATAGTGATTCTTATGAAGAGGACAAAAATATGCAAGCTACTATTGCTTTTAATCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCAAGATGCAGGTTCGGATACTTCCATGTGGTGAACAATGATTACACACATTGGCAACAATATGCAATCGGTGGAAGTTCGTCCCCGACTATTTTTAGTCAAGGCAATAGATTTCTAGCTCCAGATGATGATGACCACAAAGAGATCACGAAGCATTTTTACTCATCAAAGGGTGAGTGGGAGAACTGGAATTGGAGATCTGAAGGAGATCTAATGTTGAATGGTGCCTACTTCACACCGTCTGGAGCGGGAGCATCTTCGACATATGCCAAAGCCTCAAGCATGTCAGCACGACCACCTATGCTTGTGGCTTCAATGACCGCTGGTGCTGGAGTTCTTAGATGCAAAAGGGGTTACCAATGCTACGACTAG 1224 0.4085 MAFATILVFHFLLLAPVLIYSSHHVENPESVVQEVQKSIIENQNRRKLGYYDACGTNNPIDDCWRCDPNWENNRKRLAECAIGFGRRAIGGKDGKYYMVIDSSDDPVNPKPGTLRHAVIQEEPLWIIFKHDMVIKLKMDLLMNSFKTIDGRGANVHIAEGPCIRIQEKTNIIIHGIHIHHCVRGGSGYVSDSPNHRVRKERSDGDGITIYGAAHIWVDHCSLSNCFDGLIDVVHGSTAVTISNNYMTRHNKVMLFGHSDSYEEDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFYSSKGEWENWNWRSEGDLMLNGAYFTPSGAGASSTYAKASSMSARPPMLVASMTAGAGVLRCKRGYQCYD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Mepo3g06273 407 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Mepo3g06273 407 Gene3D - 57 398 IPR012334 -
Mepo3g06273 407 SUPERFAMILY Pectin lyase-like 33 399 IPR011050 -
Mepo3g06273 407 FunFam Pectate lyase 57 398 - -
Mepo3g06273 407 Pfam Pectate lyase 142 322 IPR002022 -
Mepo3g06273 407 SMART amb_all 131 328 IPR002022 -
Mepo3g06273 407 PANTHER PECTATE LYASE 18-RELATED 25 402 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06273 Mepo-Chr3 76853100 76855724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06273 1 405 Polysaccharide Lyase AT5G63180 66.176 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06273 K01728 - gmx:100801136 678.322