Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06272 ATGGCAGTTCCACTCTCATTCATGCTACTCTCATTACTACTTCTTATACCCTCCTTCATTCAATCTTCCCCACTTCAAGATCCTGAATTAGTAGTCCAAGATGTACAAAAGAGTATTAATGATTCAAGGAGAAACTTAGCATTCCTTTCTTGTGGAAGTGGCAACCCTATTGATGATTGTTGGAGATGTGACAAAAATTGGGAAAAGAATCGTCAACGTTTAGCAGATTGTGCCATTGGATTTGGCAAACATGCAATTGGAGGAAGAGATGGTAAAATATATGTAGTAACTGATCCTGGTGATCATGCTGTGAATCCAAAGCCAGGAACATTAAGATATGGTGTTATTCAAGAAGAACCATTGTGGATAATCTTCAAGCGTGACATGGTGATTAAGCTTAAACAAGAGTTAATGATGAATTCTTTCAAAACAATTGATGGTAGAGGAACAAATGTGCACATTGCTGGTGGACCTTGTATTACTGTACAATTTGTGACAAATATTATCATTCATGGGATTAATATACATGATTGTAAAAGAGGTGGGAATACTTATGTGAGAGATACACCAACACATTATGGTTTTAGGACACTTTCTGATGGTGATGGAGTGTCTATTTTTGGTGGGAGTCATGTTTGGGTGGATCATTGCTCTCTTTCTAATTGCCGTGATGGATTAATTGATGTTATTCATGGATCTACAGCTATTACTATTTCCAACAATTTTATGACTCATCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTTCACTAGAGATAAGAATATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGACTAGTTCAAAGAATGCCAAGATGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACACATTGGAGAATGTATGCCATAGGAGGAAGTGCTAATCCAACTATCAATAGCCAAGGCAATAGATTTCTTGCTTCCAATGACAATACCTTCAAAGAGGTGACAAAGCGCGAAAATGCAGGACAAAGTCAATGGAAGAATTGGAATTGGAGATCAAGTGGTGATTTGATGTTAAACGGTGCATTCTTTAGGCCATCAGGGGCAGGTTCATCTTCAAGCTATGCAAGAGCATCTAGTTTGGCAGCAAAACCATCATCTCTAGTAGCATCTCTCACTGCATCAGCTGGATCACTAAACTGCAGAAAAGGATCTCGCTGCTGA 1209 0.3821 MAVPLSFMLLSLLLLIPSFIQSSPLQDPELVVQDVQKSINDSRRNLAFLSCGSGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPGDHAVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITVQFVTNIIIHGINIHDCKRGGNTYVRDTPTHYGFRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSANPTINSQGNRFLASNDNTFKEVTKRENAGQSQWKNWNWRSSGDLMLNGAFFRPSGAGSSSSYARASSLAAKPSSLVASLTASAGSLNCRKGSRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06272 402 PANTHER PECTATE LYASE 18-RELATED 25 400 IPR045032 GO:0030570
Mepo3g06272 402 SMART amb_all 128 325 IPR002022 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Mepo3g06272 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Mepo3g06272 402 Pfam Pectate lyase 134 319 IPR002022 -
Mepo3g06272 402 SUPERFAMILY Pectin lyase-like 55 393 IPR011050 -
Mepo3g06272 402 Gene3D - 54 395 IPR012334 -
Mepo3g06272 402 FunFam Pectate lyase 54 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06272 Mepo-Chr3 76846462 76848272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06272 5 402 Polysaccharide Lyase AT5G63180 75.743 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06272 K01728 - gmx:100816256 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06272 3 76846462 76848272 Mepo3g06272 3 76846462 76848272 ECH
Mepo3g06272 3 76846462 76848272 Mepo1g01460 1 14407369 14410027 ECH
Mepo3g06272 3 76846462 76848272 Mepo3g05774 3 71925775 71928323 ECH