Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06228 ATGATGGATGTTTCGGAGGTTGAAGAAAATTTCTTTGCCGCAAGCGATGCCAAGTTACACACAGAAATGTGCAGAAGTCTTTCTGCAATATACTGTAAAGTATTGTCATTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCGTTAGAGAAGGCGAAGAATGTACTTAAGCATTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCCAAGTGTGCTCTTGTAGATAGTCTTAAGCTGGTGGAAGATATTGTTTCCCAGTCCATTGGCTATCAGATTGATGAAATTGTGAACGAAATTGCTGGTATGGTGTTCGTGCTTGATCCATCGGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTTAACAACTCTAATGATAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACATCTTCCAGAGCAGCTCTTTCCGAAAGAAGAGCTTTAAAAAAGCTCATTGAAAGGGCTCGGGCCGAGGAAGATAGGAGGAAGGAATCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAACTGAGTTCTCTGACGATAATGATTCTCAGGGTTCCCAACCTTGTTCTCCAACCGTTCAACCTTGTTCTCCTAACGGTGTTCCTGGTGGTCATTGTCAAGCCTTTGACAGACAGATATCAAAACTTGGTTCCTTTAATTTTAAACCTAACAATAAGAAATCAGGTCAAATGCCCCTTCCACCAGAAGAGTTAAGGTGTCCAATCTCACTGCAACTTATGAGCGATCCTGTTATAATTGCTTCTGGGCAGACATATGAAAGAGCTTGTATAGAAAAGTGGTTCAATGATGGCCACAACACCTGCCCAAAAACTCAACAGAAACTTGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAATCCCTATTCCCGAAGGCCCTCCCGAATCTCTTGATTTTAACTACTGGAGATTGGCATTGTCAGATTCCGAATCCATTAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTTAAAGTTGTTCCACTTGAAGAGAATATTATCTTAGAGCAAACTGAGGGAAATGTAACTGAAAGTTTCTCTGCACAGGAAGAGGAAGACAGTGAGAAGTATCTTAGTTTACTGAAAGTATTGACTGAAGGGAACAATTGGAAAAGGAAGTGTAAAGTGGTAGAGCGGTTAAGACTCTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTTCTTCAATCAGCTGTGCATGAAGGGAATGCGATGGCTCTGGAAAATGGAGCCATGGCTTTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGTGGGAATCTTATCGTTGTTGGAGGAAATGATTTCAAGCACCAGTTCGTACAGTTGTGCAACCGCCCTGTATCTTAATCTTTCTTGCCTTGAAGAAGCCAAGCATATGATTGGCGCCAGTCAGGCCTTGCAGTTTCTAATCCAGATGCTTAGAACTAAGACAGAAGTCCAGTGCAAGCTAGATGCCCTCCACGCACTCTATAATATTTCTACCGTACCCTCAAATATTTCAAACCTCCTTTCCTCTGGCATCATCAATGGCCTACAATCCCTTCTTGTAGGCCAGGCCGAGTGCACATGGACTGAAAAATGCATAGCTGTTTTGGTTAATTTGGCAGTTTCTCACGAAGGAAGAGAGGAAATGATGTTGAATCCTGAACTGATAAGCACATTGGCTTCTATACTCGATACTGGTGAATCCATAGAGCAGGAACAGGCTGTGTCTTGCCTCCTAATATTATGCAACAGAAGTGAGAAATGTTGTGAAATGGTCCTGCAAGAAGGCGCTATACCTGCATTGGTGTCGATAACGGTCAATGGTACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTCTTTCGAGAGCAGCGACAACGAGACCATTCACCTGCTAATACTCAAGACTGTTCACCTGAAGCTGGTGATTTGTCCATGCCTCCTCGAGAAACAAAACCTCTAAGTAAATCAATATCTAGAAGAAAAGTGGGGAAAGCTCTTAGTTTTCTATGGAAAAGCAAAAGCTATTCCGTTTACCAGTGTTAG 2301 0.4163 MMDVSEVEENFFAASDAKLHTEMCRSLSAIYCKVLSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLKHCSECSKLYLAITGDSVLLKFEKAKCALVDSLKLVEDIVSQSIGYQIDEIVNEIAGMVFVLDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATRLGITSSRAALSERRALKKLIERARAEEDRRKESIIAYLLHLMRKYSKLFRTEFSDDNDSQGSQPCSPTVQPCSPNGVPGGHCQAFDRQISKLGSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESINSRSVNSVNSCKLKGVKVVPLEENIILEQTEGNVTESFSAQEEEDSEKYLSLLKVLTEGNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALFQFLQSAVHEGNAMALENGAMALFNLAVNNNRNKELMISVGILSLLEEMISSTSSYSCATALYLNLSCLEEAKHMIGASQALQFLIQMLRTKTEVQCKLDALHALYNISTVPSNISNLLSSGIINGLQSLLVGQAECTWTEKCIAVLVNLAVSHEGREEMMLNPELISTLASILDTGESIEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSITVNGTSRGREKAQKLLMLFREQRQRDHSPANTQDCSPEAGDLSMPPRETKPLSKSISRRKVGKALSFLWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06228 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Mepo3g06228 766 SUPERFAMILY ARM repeat 428 708 IPR016024 -
Mepo3g06228 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Mepo3g06228 766 SMART arm_5 502 540 IPR000225 GO:0005515
Mepo3g06228 766 SMART arm_5 541 582 IPR000225 GO:0005515
Mepo3g06228 766 SMART arm_5 625 666 IPR000225 GO:0005515
Mepo3g06228 766 SMART arm_5 456 500 IPR000225 GO:0005515
Mepo3g06228 766 Gene3D - 422 609 IPR011989 -
Mepo3g06228 766 SUPERFAMILY RING/U-box 277 355 - -
Mepo3g06228 766 Gene3D - 610 713 IPR011989 -
Mepo3g06228 766 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Mepo3g06228 766 Coils Coil 176 196 - -
Mepo3g06228 766 MobiDBLite consensus disorder prediction 225 242 - -
Mepo3g06228 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mepo3g06228 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Mepo3g06228 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mepo3g06228 766 PANTHER U BOX DOMAIN-CONTAINING 22 711 - -
Mepo3g06228 766 MobiDBLite consensus disorder prediction 223 242 - -
Mepo3g06228 766 MobiDBLite consensus disorder prediction 710 742 - -
Mepo3g06228 766 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06228 Mepo-Chr3 76461516 76466530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06228 2 765 U-box Gene Family AT1G24330 66.110 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06228 - - gmx:100804344 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06228 3 76461516 76466530 Mepo3g06228 3 76461516 76466530 ECH
Mepo3g06228 3 76461516 76466530 Mepo2g03851 2 47740214 47745282 PCT