Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06206 ATGGAGTGGAACGTGAAATCTCCAGGGCAATGGGACTGGGAAAATTTATTCTTCTTGAATTCAAAAGCAGCAGAAACTCACAGGTTACAACCTACTGATTGGAGTATGGAGGAAGATCGAGAAATCAATGTTGGGATGTTGATTCCATCTGGTGGTAGTGGTTATTCAGTGTCTAAACTGATGCATGCTTCATCCTCGAGGGGCTCAAAATCTGCTTCCAATAATTCATCATCAAATGAGGACAGCAAGACATCGATGCTAACTCAAGAAGGTTCTCCAGACAATTCCACCGGTAAGAAAGAATCGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCAGCAGAACCATTGCTCACACTAAAGCTCGGTAAAAGATTCTACTTTGAGGATGTTGGCACTGGAAGTCATTCCAAGAAAGCCTCTTCCTCTGCAGTTCCTCTTTTGTGCGGAAAGAAAGGTAAATCGAGCAGTCAGAACTTGCTAAATCCAAGCTGCCAGGTGGAAGGTTGTGGCCTCGACCTCGCTTTTGCTAAAGATTACCATCGGAAACATAAAATTTGTGACGGTCATTCCAAATCGCCTATGGTGGTAGTAGCTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTCTCAGAGTTTGATGATAAAAAAAGAAGCTGTAGACGCCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTGAAATTGAATCCATCAGCTCTCTCTTCGTCCCCCTATGATGGGAGGCAAACAATGGGCCCATTTGCTTTTCCAAAGAATACTTCAAATTTAGCATGGCCAGACATGCCCAACAGCAAGCTCCCCCAAACCAAAGATTTTATGCTCAAAACTCCAAAAAACTTCAACAAGATTGTCACTATGCTTTCTGATGATTCCAGTGGCCATTTTATATCCAAAGGCAAAGGAACCAAGATTGCTGTTCCAGGTCTAGAAGATCCAAATACCTTGTCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTCCATATGATACCAAGCCCCTCTCCCTCATACACTCTAACCGGACAACCGGAACCCCTCAGTATGCAACTGCTCAGCGCTCACCTTTTTCGTCACCGGAATATTGGCACACTGATCAACATCAGGCCAGCTCCAGCACCTGTATCTCATTCTCGGGTTATGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTCAGCGAGCCCTATGAGTCAAGTTTCCCTTGCAACCAGCTGGATTGA 1305 0.4483 MEWNVKSPGQWDWENLFFLNSKAAETHRLQPTDWSMEEDREINVGMLIPSGGSGYSVSKLMHASSSRGSKSASNNSSSNEDSKTSMLTQEGSPDNSTGKKESSKGDPIETSPAAEPLLTLKLGKRFYFEDVGTGSHSKKASSSAVPLLCGKKGKSSSQNLLNPSCQVEGCGLDLAFAKDYHRKHKICDGHSKSPMVVVAGLERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRKPQPEAVKLNPSALSSSPYDGRQTMGPFAFPKNTSNLAWPDMPNSKLPQTKDFMLKTPKNFNKIVTMLSDDSSGHFISKGKGTKIAVPGLEDPNTLSDPNATQDVNRALSLLSTNSWGPYDTKPLSLIHSNRTTGTPQYATAQRSPFSSPEYWHTDQHQASSSTCISFSGYDNSNRFQDFQLFSEPYESSFPCNQLD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06206 434 MobiDBLite consensus disorder prediction 58 114 - -
Mepo3g06206 434 MobiDBLite consensus disorder prediction 58 96 - -
Mepo3g06206 434 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
Mepo3g06206 434 Pfam SBP domain 165 238 IPR004333 GO:0003677
Mepo3g06206 434 Gene3D - 161 226 IPR036893 GO:0003677|GO:0005634
Mepo3g06206 434 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Mepo3g06206 434 MobiDBLite consensus disorder prediction 229 257 - -
Mepo3g06206 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 391 IPR044817 GO:0003677
Mepo3g06206 434 FunFam Squamosa promoter-binding-like protein 14 156 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06206 Mepo-Chr3 76233619 76238447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06206 1 420 SBP-box Gene Family AT5G43270 36.564 1.57e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo3g06206 SBP 6.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06206 - - mtr:11441057 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06206 3 76233619 76238447 Mepo3g06206 3 76233619 76238447 ECH