Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06133 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAGAATGCACCAACACCACCACCTTCTGCTGCTGCTGCTAACAATGCTGCCAACACCCGACCTGTTTACGTTCCTCCTCATCTGAGGAACCGTGGACCTTCAGCACCAGCACCTGCACCAGCAGCACCTGCTTTCGATAACTCCGGATCACGTTGGGCACCTCCACCTAGGAACGATTATCGCGGTGGTGGTGGTGGCCGTGGTGGTGGTTATGGGAACAGAGGTGGTGGTGGTTGGGATCGTCGTGAAGCAAATCCATTTGCAGATCAGGATGATTCCGAGGAGCCTGTTACTCAAGAGGAGCAGGAGAATACAGGCATAAACTTTGATGCTTACGAGGATATTCCGGTGGAGACGAGCGGTGGAAATGTTCCTTCGCCGGTGAATACTTTTGCTGAGATTGATTTAGGTGAGGCGCTTAATCAGAATATAAGGCGATGTAAGTATGTCAAGCCGACGCCTGTTCAGCGGCATGCAATTCCGATTTCCCTTGCTGGAAGGGATTTGATGGCATGTGCGCAGACCGGTTCTGGGAAGACTGCGGCGTTCTGTTTTCCGATAATCAGTGGAATTATGACGGGACAGCCTGCGCAGAGGCCACCTCGTGGGGTGCGTACCGTGTGTCCGCTTGCTCTTGTTCTCTCGCCAACTAGGGAGCTATCGATGCAGATACATGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTTAGGGTGGTTGTTGCTTACGGTGGTGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGAGTGGACATTCTTGTCGCAACTCCAGGAAGACTGGTTGATTTGTTGGAAAGAGCCAGAGTTTCACTGTCGATGATTAGGTATCTGGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAGATTAGAAAGATTGTTGAACAAATGGACATGCCTCCAGCAGGTGTCAGACAAACTATGTTGTTCAGTGCCACTTTTCCGAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGATCAAGTACCGATTTAATTGACCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAAAGAGCAAATGGCGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCGCTGGAACACTGGTTGTGTCTTAATAATTTCCCAGCAACTACTATTCATGGTGACAGGTCACAACAGGAAAGAGAGGCAGCATTAAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCTACTGATGTGGCTGCGCGTGGTCTTGACATACCACATGTTGCACATGTAGTTAACTTTGACCTTCCCAATGACATTGATGATTATGTACACCGTATTGGAAGGACAGGGAGAGCAGGAAAGAAAGGTCTTGCAACTGCGTTCTTTAATGAAAACAATACATCTATGGCAAGATCTCTACAAGATTTAATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTTGCGGTTCGCTGCACGTTCATCCTTTGGTGGAGGAAAGAACCGTCGTTCAGGAGGAGGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACCATGGTGCAGGAAATAGCGGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGAGGATATGGTGGTGGGTATGCTGGAAATAGCGCAGGTCCTGGGGTGACCAGTGCATGGGACTGA 1836 0.4864 MRSSWADLAANSAAENAPTPPPSAAAANNAANTRPVYVPPHLRNRGPSAPAPAPAAPAFDNSGSRWAPPPRNDYRGGGGGRGGGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPSPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLLRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06133 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 516 IPR027417 -
Mepo3g06133 611 Pfam Helicase conserved C-terminal domain 383 498 IPR001650 -
Mepo3g06133 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Mepo3g06133 611 Gene3D - 362 541 IPR027417 -
Mepo3g06133 611 FunFam Probable ATP-dependent RNA helicase DDX4 104 361 - -
Mepo3g06133 611 CDD SF2_C_DEAD 371 507 - -
Mepo3g06133 611 MobiDBLite consensus disorder prediction 1 120 - -
Mepo3g06133 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 359 IPR014001 -
Mepo3g06133 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 537 IPR001650 -
Mepo3g06133 611 SMART helicmild6 417 498 IPR001650 -
Mepo3g06133 611 Pfam DEAD/DEAH box helicase 167 348 IPR011545 GO:0003676|GO:0005524
Mepo3g06133 611 SMART ultradead3 162 374 IPR014001 -
Mepo3g06133 611 FunFam ATP-dependent RNA helicase RhlB 362 541 - -
Mepo3g06133 611 CDD DEADc_DDX3_DDX4 144 365 IPR044763 GO:0003724|GO:0005524
Mepo3g06133 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 113 537 - -
Mepo3g06133 611 Coils Coil 508 528 - -
Mepo3g06133 611 MobiDBLite consensus disorder prediction 1 30 - -
Mepo3g06133 611 Gene3D - 98 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06133 Mepo-Chr3 75541711 75547524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06133 132 530 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 9.57e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06133 K11594 - gmx:100795756 875.544