Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06121 ATGGACGAAACAATGGCGGCAAGATATTGGTGTCACGCGTGTTCTCAAATAGTCAGCCCTGTCATGGGAATGGAGATCAAATGTCCACTTTGCCAAAGTGGATTCATCGAAGAAATGAGCAGTGCTACTGGTATCAGTGACTTGCAAAATATACCAGAACCTGATTTTGAAGTGGATCGTTCTCCCTCTCTTTGGGCACCAATCTTGCTAGGCATGATGGGTAATCCGCGGCTTCGTCGAAGATTGAGACGAATAGAGCTTGAAGATGATTATGAAAGTGGTAATCGTGATGATGATCATGGTGGTGTAGGACATTATGATCGAGAGCTCGAGTCCATCCTTCGAAGGAGGAGAAGAAGCTCGGCTACCATTCAGCAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAATCACACGAGAATAGTGACAGTGATGACCGTGTTAGGGAAAGAGAAAGAGAGCATGTAATCTTGATTAATCCTTTTAATCAGACTATTATAGTTCAAGGTTCCTATGATTCAAACCGAGATCAAAGTGATAATCATAACCCAATTGGGGCGCTTGGCGACTATTTCGTAGGGCCTGGTTTGGATCTGTTGTTGCAACATTTGTCTGAGAATGACCCTAATAGGTATGGAACTCCACCTGCACCGAAGGAAGCCGTTGAATCTCTACCGACTGTGAAGATTATTGAGAATTTGCAGTGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTACCCTGGCTGGAGCTTCATAGTTCTTGCCCTGTTTGCAGGTCTCAACTGCGAGTGGATGAACCTAAGCAAGACTCTGATGTGTCAAGGAATCACAGAAATCAAAGGGATGATGAAATTACTGGACATGCCAATGCCAATGCTGAAGAAGATAGTGAAGGGAGAAGTCCAAATGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCCTCATCATCTTCTAGTTCCAATGCAAATGGAAATGGTACTCGATCAGAAAGAAACTGA 1071 0.4332 MDETMAARYWCHACSQIVSPVMGMEIKCPLCQSGFIEEMSSATGISDLQNIPEPDFEVDRSPSLWAPILLGMMGNPRLRRRLRRIELEDDYESGNRDDDHGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSESHENSDSDDRVREREREHVILINPFNQTIIVQGSYDSNRDQSDNHNPIGALGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVESLPTVKIIENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQDSDVSRNHRNQRDDEITGHANANAEEDSEGRSPNGGRRFSFPWPFNGLFSSSSSSSNANGNGTRSERN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06121 356 SMART ring_2 237 277 IPR001841 -
Mepo3g06121 356 FunFam E3 ubiquitin-protein ligase RING1-like 204 284 - -
Mepo3g06121 356 MobiDBLite consensus disorder prediction 284 321 - -
Mepo3g06121 356 Pfam Ring finger domain 236 278 IPR001841 -
Mepo3g06121 356 SUPERFAMILY RING/U-box 227 288 - -
Mepo3g06121 356 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Mepo3g06121 356 MobiDBLite consensus disorder prediction 284 356 - -
Mepo3g06121 356 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Mepo3g06121 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 142 281 - -
Mepo3g06121 356 CDD RING-H2_RNF126-like 236 278 - -
Mepo3g06121 356 MobiDBLite consensus disorder prediction 333 356 - -
Mepo3g06121 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 283 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06121 Mepo-Chr3 75417565 75420065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06121 134 284 C3H Transcription Factor Family AT1G26800 37.255 5.62e-25 99.0