Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06078 ATGGGTCGTTGCTGCCGTGCCGCGTCACGCTCCTCCCCCGTTGCTGCTGACGACAACAGATCCAAGAGAAAAAAGGTTGCTTTAAATGCTGACAATTTAGAAACTTCATCTGCAGCAGGAATTTGCATAACTGATGGCAAAGTATCACTATATCACTGTAATTACTGCAACAAAGATATTTCTGGGAAGATTCGTATCAAATGCGCCGTGTGTCAAGATTTTGATCTCTGCATTGAGTGCTTTTCTGTTGGTGTTGAGTTAACTCCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCGCTTATATGTCCAGATTGGAGTGCAGAGGAAGAGATGTTACTTCTTGAGGCCCTTGACATGTATGGATTTGGGAATTGGAATGATGTTGCAGACAACATTGGAACGAAAAGCAAATCTCAGTGTATTGACCACTATAATACTGTATATGTGAATTCACCATGTTTTCCTGTACCTGATTTGTCTCATTTTTCGGGAAAGAACAAAGAGGAACTCCTTGCCATGGCAAAGGGAAATCAAGTCAAGAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAAGAACCTCTCTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGCAGAAACCACTAATCAAACGATGTCTAGGCTAACCTCAGCACACGATAAAGCTCTTTCAAGTTCAATCAAGAAGGCTTCCAATGTGAGCCAGAATAATGATGGAGTTAAGGTGGAAGAATCTCAAGCAGGTCGGAGCATCGGTGAAAAGAAACCTAAATTATCTGGGGAATATAGGCCTTCTATGAAAGTGTTGAGTGGGTACAATTCTAAGAGAGGTGACTTTGATATTGAATATGACAATGATGCTGAGCAAGTTTTGGCAGAAATGGAATTTTTGGACACTGATACTGAAGCTGAATGTGAAATGAAACTGCAAGTGCTCCGTATTTACTCAAAAAGGTTAGATGAACGAAAGCGCAGAAAAGATTTTATACTTGAAAGAAATTTACTTTGTCCCAATCCTTTTGAGAAATATCTCTCACCTGAAGAGCTTCAAATATGCGAACAGTACAAGGTCTTCACGCGGTTTCACTCAAAAGAAGAGCACGAGGAGTTGCTAAAAACTATTATTAAAGAACACCGACTTGCCAAAAGAATACAAGACTTAAAGGAAGCTAGAATTGCTGGCTGTGTAACTGCTGCTGAAGCTTATCAATTTATTGAACAAAAGAGGACAAAAGAAGCTGAACAAGGTGACTGTAAAGAAAGTGGTCAGATTGGAACAAGTGGCAAGACTTCACAGAGACCAAATTTTTCCAAAGTAGAGCTTGGTAGTAGCCCGCGCGGTATCCATAAGGGCACTACAGCATCATTTGCTGGTATCAAGGATGCGCCGGCTGCCATACAAGATATCGCGAGGACGCTAGAAGAATGGGATATCAGTGATTTTGATGGGGCTGAGTTGCTTTCTGAATCTGAAATAAAGCTTTGTAATGAGATCAGAATGCTGCCGCCACACTACCTCAACATTACGCGGATTATGCAATTAGAAATTTCGAATGGCAGAGTAACCAAGAAATCTGATGCATATCCTTTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGGAAAAAGGAGTTGTTCAAGAAAAATGA 1695 0.4029 MGRCCRAASRSSPVAADDNRSKRKKVALNADNLETSSAAGICITDGKVSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDLSHFSGKNKEELLAMAKGNQVKKEFPPNAELTLKEEPLFSDGINSEESKKAETTNQTMSRLTSAHDKALSSSIKKASNVSQNNDGVKVEESQAGRSIGEKKPKLSGEYRPSMKVLSGYNSKRGDFDIEYDNDAEQVLAEMEFLDTDTEAECEMKLQVLRIYSKRLDERKRRKDFILERNLLCPNPFEKYLSPEELQICEQYKVFTRFHSKEEHEELLKTIIKEHRLAKRIQDLKEARIAGCVTAAEAYQFIEQKRTKEAEQGDCKESGQIGTSGKTSQRPNFSKVELGSSPRGIHKGTTASFAGIKDAPAAIQDIARTLEEWDISDFDGAELLSESEIKLCNEIRMLPPHYLNITRIMQLEISNGRVTKKSDAYPLFKFSPSKIDRIYDMLVEKGVVQEK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06078 564 ProSiteProfiles SANT domain profile. 106 158 IPR017884 -
Mepo3g06078 564 Pfam Myb-like DNA-binding domain 110 152 IPR001005 -
Mepo3g06078 564 SMART zz_5 47 92 IPR000433 GO:0008270
Mepo3g06078 564 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g06078 564 FunFam Transcriptional adapter 44 99 - -
Mepo3g06078 564 MobiDBLite consensus disorder prediction 237 253 - -
Mepo3g06078 564 FunFam Transcriptional adapter 2 479 562 - -
Mepo3g06078 564 ProSiteProfiles Myb-like domain profile. 111 154 IPR001005 -
Mepo3g06078 564 PIRSF Txn_adaptor_ADA2 41 564 IPR016827 GO:0003713|GO:0006357|GO:0035065
Mepo3g06078 564 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 51 558 - -
Mepo3g06078 564 SUPERFAMILY Homeodomain-like 104 157 IPR009057 -
Mepo3g06078 564 SUPERFAMILY RING/U-box 51 113 - -
Mepo3g06078 564 CDD SANT 111 153 IPR001005 -
Mepo3g06078 564 Gene3D - 105 156 - -
Mepo3g06078 564 MobiDBLite consensus disorder prediction 430 449 - -
Mepo3g06078 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 158 IPR017930 -
Mepo3g06078 564 CDD ZZ_ADA2 51 99 IPR041983 -
Mepo3g06078 564 ProSiteProfiles Zinc finger ZZ-type profile. 48 104 IPR000433 GO:0008270
Mepo3g06078 564 ProSiteProfiles SWIRM domain profile. 477 564 IPR007526 GO:0005515
Mepo3g06078 564 Pfam Zinc finger, ZZ type 51 83 IPR000433 GO:0008270
Mepo3g06078 564 ProSitePatterns Zinc finger ZZ-type signature. 53 80 IPR000433 GO:0008270
Mepo3g06078 564 SUPERFAMILY Homeodomain-like 482 563 IPR009057 -
Mepo3g06078 564 MobiDBLite consensus disorder prediction 425 454 - -
Mepo3g06078 564 Gene3D - 478 563 IPR036388 -
Mepo3g06078 564 SMART sant 107 156 IPR001005 -
Mepo3g06078 564 Gene3D - 46 100 IPR043145 -
Mepo3g06078 564 MobiDBLite consensus disorder prediction 237 269 - -
Mepo3g06078 564 FunFam Transcriptional adapter 2 104 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06078 Mepo-Chr3 75034744 75041733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06078 1 560 EF-hand Containing Proteins AT3G07740 50.960 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo3g06078 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06078 K11314 - gmx:100779424 819.305