Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06061 ATGGCTTCCAGAAAGTCCGATAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATTGGAGGTTTAGCCAAAGACACATCCCCAGAGACGTTTGTGAAGTACTTTGAAAGGTATGGAGAGATAACGGATTCCGTTATCATGAAAGATCGGCATACCGGTCGTCCTCGAGGATTTGGGTTCATCACTTATGCGGATGCTTCTGTTGTTGATCAAGTTATTCAGGAGAATCACATCATCAATGATAAGCAGGTTGAAATCAAGAGGACTATTCCAAAGGGTGCATCTCATACTAATGACTTCAAAACTAAGAAGATTTTTGTTGGTGGCATTCCAGCAACTGTATCTGAAGATGAGCTCAAGAACTTCTTCTCGAAGCATGGGAATGTTGTGGAGCACGAGATCATACGCGACCATACCACTAAGCGTTCTCGTGGATTTGGTTTTGTAGTTTTTGATAGCGATAAGGCCGTTGATAATTTGTTAGCTGATGGGAACATGATTGATATGGATGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCTTCAAATTCATCTTCTTTTCCTTCATTTGGTAGTGATTCTAGGGCACGTTCTTACAATGGCGGTTTTGGTGGATTTGACGATTCTTATGGAAGTTTTCCTGCCGGAGGTTATGGCCCTGCATCTTATAGGTCGCTTGGAGGTTTTGGTGGTAGGTTTAGCGATTATGGTGGGTATGGAGGTGGAGATGATTTCAGTGGTGGTTTTGGAGGTTATGGAGGCAGTGGTGGTGCTGGTGGTTATGCGGGCTATAGAGGAGGCGAATCTTCATTCGGTTACTCTGGCCGCTATGGATCCTACATGGGGGGGCTTGGTGGTGGATATGGTGGTGGTGGGTTAGGCCCATATGGGAGAGGTGGTGGTGGCTATGGAAGTTATGGTGGTCCAGGCACTGGTGGAGGTTATGAATCTGGCCCTGGTGCTGGTTTTGGTGGGACAGGAGGACCCTATTCTAGTAGGGGAGGTTATGGGGGCAGTAGTCGTTACCATCCTTACACAAGATAG 1062 0.4689 MASRKSDNPHSGDGASPGKIFIGGLAKDTSPETFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQENHIINDKQVEIKRTIPKGASHTNDFKTKKIFVGGIPATVSEDELKNFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDGTQVEIKKAEPKKSSNSSSFPSFGSDSRARSYNGGFGGFDDSYGSFPAGGYGPASYRSLGGFGGRFSDYGGYGGGDDFSGGFGGYGGSGGAGGYAGYRGGESSFGYSGRYGSYMGGLGGGYGGGGLGPYGRGGGGYGSYGGPGTGGGYESGPGAGFGGTGGPYSSRGGYGGSSRYHPYTR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06061 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 171 IPR000504 GO:0003723
Mepo3g06061 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 82 IPR000504 GO:0003723
Mepo3g06061 353 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g06061 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Mepo3g06061 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Mepo3g06061 353 Gene3D - 98 219 IPR012677 -
Mepo3g06061 353 MobiDBLite consensus disorder prediction 180 199 - -
Mepo3g06061 353 SUPERFAMILY RNA-binding domain, RBD 9 96 IPR035979 GO:0003676
Mepo3g06061 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Mepo3g06061 353 SMART rrm1_1 107 180 IPR000504 GO:0003723
Mepo3g06061 353 SMART rrm1_1 19 90 IPR000504 GO:0003723
Mepo3g06061 353 SUPERFAMILY RNA-binding domain, RBD 102 212 IPR035979 GO:0003676
Mepo3g06061 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 353 - -
Mepo3g06061 353 MobiDBLite consensus disorder prediction 328 353 - -
Mepo3g06061 353 Gene3D - 18 97 IPR012677 -
Mepo3g06061 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06061 Mepo-Chr3 74916079 74919549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06061 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 4.19e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06061 3 74916079 74919549 Mepo3g06061 3 74916079 74919549 ECH
Mepo3g06061 3 74916079 74919549 Mepo7g03047 7 41325322 41330514 PCT