Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo3g06045 | ATGAGAATAAAATCCGTCGTCACCGGTGTTCGCCGCCGTAGTATAACACCTTCCACCGCCTCTCCCATTCCTCTCCTCCCCACCACCAACGACGACCACAATGCAACCGTCTACAACAGCAACAGCGACGACAACCACCACACTCACTCTCCATTTCCCGATTCCGTTCCCGAAACCGTACCCGTTGATTCCTTAGACGATAACATTTGCATTATCTGCAACAAACTCGGAGGTGAATTGCTCGTATGTTCCCAAACCGATTGCCCCGTTTCTGTCCACGTCACTTGCATCGGTTCCGAACCTAAATTCGATGATTCTGGAAACTTCGTTTGTCCTTATTGCGCGTACAAACGCGCGTTGAAGAAAACTAGAGAATTAAGAGAAAAAGCGATTCTGGCGAAGAAAGCTCTTTGTAGCTTTTTAGACAAACACCAAACAGTGCATAAGGATAAGGAAAACCAACCGGTTCAAACAGAACGGGAACCGGTTCAGGATCATGTAAACCGGAATGAACCGGAAGTGAATGAACCGGAAGTGGATGAACCAAAAGTTTCTGATTCTGTTGAGGAAAGTAATAATGATAAGGAAAACAATGAAGATGAAGATGAAGATGAAGGAAAGGTTTCTGTATCGGGTAGTTCAGTGAGTGAAACTAGAGATTCTGATTATGAGGTTTCTGTGGTGGAGAAGAAAGGTCGTCCAAACGTTAAACGTAAGGCTGCTCCTGTGAAAAAAGCATTGCTCAGGGAACGGAAAACTGGTGGTGGTGGTGATGACGTAGACGAGGAGGAAGTTTCTAGCTCCAGAACTTCAAGAGTACGAAAGCAAGTCACGAAGCAGAATATGCTGACTGGAAAACGTAAGAGATTGAATTGGACAGCTGAAGAAGAAAAAGTTCTCAAGGAAGGAGTGTTGAAATTTGCAACAGAAGATCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGCCGTGTGTTTGATAAGACTCGTACTCCTGTTGATCTCAAGGATAAGTGGAGGAAAATTACCTCCAAGCAAGGATGCAAGTAG | 1053 | 0.4435 | MRIKSVVTGVRRRSITPSTASPIPLLPTTNDDHNATVYNSNSDDNHHTHSPFPDSVPETVPVDSLDDNICIICNKLGGELLVCSQTDCPVSVHVTCIGSEPKFDDSGNFVCPYCAYKRALKKTRELREKAILAKKALCSFLDKHQTVHKDKENQPVQTEREPVQDHVNRNEPEVNEPEVDEPKVSDSVEESNNDKENNEDEDEDEGKVSVSGSSVSETRDSDYEVSVVEKKGRPNVKRKAAPVKKALLRERKTGGGGDDVDEEEVSSSRTSRVRKQVTKQNMLTGKRKRLNWTAEEEKVLKEGVLKFATEDQNIPWRKILEFGCRVFDKTRTPVDLKDKWRKITSKQGCK | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06045 | 350 | MobiDBLite | consensus disorder prediction | 17 | 58 | - | - | |
| Mepo3g06045 | 350 | Pfam | Myb-like DNA-binding domain | 290 | 343 | IPR001005 | - | |
| Mepo3g06045 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 167 | IPR013083 | - | |
| Mepo3g06045 | 350 | Gene3D | - | 281 | 346 | - | - | |
| Mepo3g06045 | 350 | MobiDBLite | consensus disorder prediction | 147 | 282 | - | - | |
| Mepo3g06045 | 350 | MobiDBLite | consensus disorder prediction | 222 | 236 | - | - | |
| Mepo3g06045 | 350 | MobiDBLite | consensus disorder prediction | 246 | 270 | - | - | |
| Mepo3g06045 | 350 | SMART | sant | 288 | 346 | IPR001005 | - | |
| Mepo3g06045 | 350 | SUPERFAMILY | FYVE/PHD zinc finger | 64 | 123 | IPR011011 | - | |
| Mepo3g06045 | 350 | ProSitePatterns | Zinc finger PHD-type signature. | 70 | 114 | IPR019786 | - | |
| Mepo3g06045 | 350 | CDD | SANT_TRF | 292 | 341 | - | - | |
| Mepo3g06045 | 350 | ProSiteProfiles | Zinc finger PHD-type profile. | 67 | 117 | IPR019787 | - | |
| Mepo3g06045 | 350 | MobiDBLite | consensus disorder prediction | 147 | 192 | - | - | |
| Mepo3g06045 | 350 | ProSiteProfiles | Myb-like domain profile. | 284 | 344 | IPR001005 | - | |
| Mepo3g06045 | 350 | SMART | PHD_3 | 69 | 115 | IPR001965 | - | |
| Mepo3g06045 | 350 | SUPERFAMILY | Homeodomain-like | 287 | 344 | IPR009057 | - | |
| Mepo3g06045 | 350 | MobiDBLite | consensus disorder prediction | 17 | 46 | - | - | |
| Mepo3g06045 | 350 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 32 | 346 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06045 | 289 | 344 | Single Myb Histone (SMH) Gene Family | AT3G49850 | 49.123 | 1.13e-06 | 47.8 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Mepo3g06045 | Myb_DNA-binding | 2.2e-06 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo3g06045 | - | - | mtr:11429054 | 543.502 |