Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06030 ATGGAGAAGGAAGGTGTTGAACTTCAAACTGATGCAGTTTCAATGATGTCAGATTCTTCTCTTCTTCATCATCAGTCCAGAAGGCCTAGTCTTTCATCTCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCATCTTCTACTAAGACAGATGGTCCTACATTATCAAGTCCAGGTTCCACTAGAGGACTGCCGCCAAGGCCACATTCTACTAAAGTCAAGTCCTCTATGAAAAATTTACTTTCTGATAGAAGCTTTAGGACAAAAACTTGTTCAGAAGATTCTGAAAAGAGAGTTTTGATTGTTTCTGATACTTTATCATCAGATAATGGTCCTTTGGATAATAAGCCTTCAACTTCAAGGTCTCATTCACTTAATAAGATTTTGTTCCCTTCATCAACAAAAGCGGCACATTCGTTACCGGTTACTCCAATTGCTAATTCAGGTGCAGAGAATGTACATGGAAGACATGTAGAGGGTGGTTCTGATTCAAATAAAGTGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTCAAAGCCACTAATTTAAGGCCTGCAACAGATTCTAGGCGTCTAGTTCGTGTTATTTCAGCAAGACCACAGCCAGCAACTACTGATGGTGTTTCAACCCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGCAGGATTTGTTTGGTGGAGCTTGCGGAAGGGGGAGATACTCTTAGGATGGATTGCAGTTGTAAAGGCGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAGCAGGATGTCCGGAATCTTCCAGTAACACTCTTGAAAATTTCTAGTCCTCCGACTGTTGTTCGGCATACATTGAATGCATCACAACAGAGAGCAGTAACTAATTACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGCTTTCTGGAGGAACTACTGGTTTCAGATTTGGGCCCACGTGCTCTTGCCATTTCGTTGCCTTTCTCCTGCATTTTAGGTCTCCTTTCATCTATTATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTCGCATTTGTCATCCTGTTTGCTCATATATTCTATTCTATACTTAATGTGAGTGCGATTTTCTCGGTTCTTCTTGCAACATTCACTGGATTTGGGATTGCAATCAGCATGAATTCTCTCCTAATGGAATATATCAGATGGGAAACAAATAGGCAGATTCGATCTTCTAATCAAAATATTATTTCGAGTCAGCAGCAGCAGCAGCAAGAAACTCAGAGACAACCACATCAACTGCAAAGGATGCAGCAAGAGCAGCACCAATGA 1437 0.4113 MEKEGVELQTDAVSMMSDSSLLHHQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMKNLLSDRSFRTKTCSEDSEKRVLIVSDTLSSDNGPLDNKPSTSRSHSLNKILFPSSTKAAHSLPVTPIANSGAENVHGRHVEGGSDSNKVKVNKHMTRSFSVPVNVKATNLRPATDSRRLVRVISARPQPATTDGVSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRHTLNASQQRAVTNYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSIIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSAIFSVLLATFTGFGIAISMNSLLMEYIRWETNRQIRSSNQNIISSQQQQQQETQRQPHQLQRMQQEQHQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06030 478 PANTHER OS02G0165000 PROTEIN 23 458 - -
Mepo3g06030 478 MobiDBLite consensus disorder prediction 15 95 - -
Mepo3g06030 478 Coils Coil 469 478 - -
Mepo3g06030 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 295 IPR013083 -
Mepo3g06030 478 MobiDBLite consensus disorder prediction 73 87 - -
Mepo3g06030 478 SMART ringv_2 239 288 IPR011016 GO:0008270
Mepo3g06030 478 ProSiteProfiles Zinc finger RING-CH-type profile. 232 294 IPR011016 GO:0008270
Mepo3g06030 478 Pfam RING-variant domain 240 287 IPR011016 GO:0008270
Mepo3g06030 478 MobiDBLite consensus disorder prediction 455 478 - -
Mepo3g06030 478 CDD RING_CH-C4HC3_MARCH 240 288 - -
Mepo3g06030 478 MobiDBLite consensus disorder prediction 15 65 - -
Mepo3g06030 478 SUPERFAMILY RING/U-box 236 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06030 Mepo-Chr3 74572332 74576395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06030 234 294 C3H Transcription Factor Family AT2G37950 46.774 3.49e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06030 - - gmx:100779396 617.461