Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06008 ATGTTAAAGAAAAAGACTAGTTTGGGTCGTCAAAAAATCCCTATTGAGAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGACGCTCCGGACTTTTCAAGAAGGCTAGCGAACTTTGCACTCTTTGTGGGGTGGAAATTGCAATTGTGGTTTTCTCTCCGGCCAATAAGGCATTCTCATTTGGCCATCCAGAAGTCGAGTCTATCATTGATCGTTATCTTAGTCGAAACCCTCCACAAGAGTCTAGTTCTCACCAACTTGTTGAGGCTCATAGAAATGCTAATGTCCGCGATCTCAACGTGCAACTAACTCAACTTCTTAGCCATCTTGAGATTGAGAAGAAGCAAGGAGAAGAGATAGATCATGTGAGAAAAGCTAGGCAAATGCAATTTTGGTGGGAAAGCCCTGTTGATGAACTTGGCTTGAATGAATTGCTCCAATTAAAGGTTTCTATTGAGGACCTCAGGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCCAATGTTTCTTCATCAAATATTGGAGCTAATGGATTTTTAGGCGTGGGGATTAATATTGCTTCCCCACTTCCTAATAGCTATTATCTTGGTTTTCGAATTTGA 624 0.3942 MLKKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDHVRKARQMQFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSNVSSSNIGANGFLGVGINIASPLPNSYYLGFRI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06008 207 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mepo3g06008 207 PANTHER MADS BOX PROTEIN 10 162 - -
Mepo3g06008 207 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mepo3g06008 207 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Mepo3g06008 207 Gene3D - 89 183 - -
Mepo3g06008 207 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Mepo3g06008 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mepo3g06008 207 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mepo3g06008 207 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mepo3g06008 207 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mepo3g06008 207 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mepo3g06008 207 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06008 Mepo-Chr3 74323531 74324154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06008 5 183 Type I MADS-box Gene Family AT5G60440 53.297 1.01e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g06008 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06008 - - tpra:123905348 346.665