Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05979 ATGTCTGTGGGAACTATTGGTGCTATTGGAAATGGACTTGCCACACCCTTGATGACTGTAGTCTTTGGAAATTTGATTGATGCATTTGGAAGAGCCACAAACCCTAGAGAAGTAGTTCATGATGTTTCTAAGGTGGTCCTGAATTTTGTATACTTGGCTGTTGGCTCCTTCGTAGGATCATTTTTTCAGGTGTCTTGCTGGATAGTCACTGGGGAGAGACAAGCATCAAGAATTAGAAATTTATACCTGAAAGCAATTTTGAGGCAAGATATGAGCTTCTTTGACATGGAAGAAACTAATACTGGCGAGGTTGTTGGAAGGATGTCAAGTGACACGATTCTTATTCAAGATGCAATGGGTGAGAAGGTAGGACAGTTGATACAGTCAGTGGCAACCTTCACTGGAGGTTTTGTGATAGCATTCGTTAAGGGATGGCTTCTAACCCTTGTCTTGCTGTCCTCAATTCCACCTCTTGTCTTAGCTAGTGCTGTAATGAGTATTGTTATTGCAAAAGTGGCATCCCGTAGACAAGTTACCTATTCTGAAGCAGCAACGGTGGTAGAGCAGACACTTAGTTCTATTAGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATAATCAATCTTTAACAAAAGCATACAAGAGTGGTGTGCAAGAGGGAATGGTTTCTGGTTTCCGAATTGGTTCAGTTTATTTTATTGTTTTCTGTGCCTATGGTTTAGCTATATGGTTTGGTGGGAAATTGGTACTAGAGAAAGGGTACGCAGGAGGGAACATTACGACTGTAATATTTGCAATAATGACAGGGTCCCTTTCTCTTGGTCAGGCGTCTCCTAGCCTCAGCGCTTTAGCTTCAGGACGAGCTGCGGCATTTAAGATGTTTGAAACAATTAACAGGAAACCAGATATTGATGCATATGAAACAACAGGTCAACAGCTTGATGATATTGGTGGGGACATAGAGCTGAGAGACGTAAGTTTTAGTTATCCTTCAAGGCCAGATGAAGCTATATTCAATGGATTTTCTCTTTCAATACCAAGGGGAACAACAACAGCTTTGGTGGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAACCTGATAGAGAGGCTTTATGATCCACAAGATGGACAAGTTCTCATTGACGGAATCAACATAAAAGAATTCCAGCTTAAATGGATTAGACAGAAAATAGGCTTGGTCAGCCAGGAGCCAGTTCTGTTTACAGGCATCATTAAAGAAAACATTACCTATGGTAAGGATGGTGCAACTGAAAAAGAAGTCAGAGAAGCAGCAGATCTTGCCAATGCTTCTGGGTTCATAGATAAATTTCCACAGGGGTTCGATACAATTATAGGTGAACGCGGAATGCAGCTTTCAGGGGGTCAAAAGCAGAGAGTTGCTATAGCTAGAGCAATTTTAAAAGATCCAAAAATTCTTCTTCTGGATGAGGCTACAAGTGCCCTTGATGTGGAATCTGAAAAAAATAGTACAGGAGGCACTAGACAAAATCATGATAAACAGAACTACTGTTATTGTTGCCCACCGCTTAAGTACTGTTCACATGTGGAACTCACTAAAGATCCTGATGGGGCCTATACTAAGCTCATTAGTTTACAAGAGACTGAGAAGGAGGCAGAAGTACAGAATGTTGCAACTGACTCTGACAGACCAGAAAGTATTTCATATTCTTCAAATCAAAGATTTTCTCACTTGCAAACTATAAGCCAAGTTGGAAACAGCGGTCATCACTCATTCTCAGTGTCACATGCACTTTCTACAACAATTGTTCCTCTGGAAACATCTGGTGGGGAAGTTGAACTTCCTCCTTTAGGAACCTCACAACAACCACCACCTCCAAAAGTACCACTTCGCCGCTTAGCTTATCTAAACAAGCCTGAGATCCCAGTCTTACTTATAGGAACGATGTCTGCAGTGGTAAATGAAGCAATATTACCTTTGTTTGGATTAATGGTTGCCAAAATGGTCAATACTTTGTATGAGCCTGCAGATGAACTCCACGAAGATTCAAAGTTTTGGGCATTGATTTTTGTTGTCCTTGGTGTGTCATCTTTCTTAGTTTTTCCTACAAGGTCCTACTTTTTTTCCATTGCTGGTGAGAAGTTAGTACAGAGGGTGCGACTGATGTGTTTTGAGAAAATAATTCGAATGGAAGTGAGTTGGTTTGATGAAACTGAGAATTCAAGTGGTGCACTTGCAGCAAAGCTGTCCACCAATGCTGCTACTGTTAGAGGTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAGAATATCGCATATGGAAATGGAAAAGATGCAACAGAAGCAGAGATCATTGCTGCAGCAAAAATGGCAAATGCTCATAAGTTCATTAGTAGTTTGCAGCAGGCCACCAGTGCCCTTGATGCTGAGTCCGAAAAAGTAGTTCAGGATGCACTGGATCGAGTTATGGTTGACCGAACCACAATTATAGTGGCACACAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTGGTGAAGAATGGGGTCATTACAGAGAAAGGAAATCATGAAACATTGATCAACAAGGGAGGTCACTATGCTTCCATAGTAGATATAAATCACTGA 2628 0.4132 MSVGTIGAIGNGLATPLMTVVFGNLIDAFGRATNPREVVHDVSKVVLNFVYLAVGSFVGSFFQVSCWIVTGERQASRIRNLYLKAILRQDMSFFDMEETNTGEVVGRMSSDTILIQDAMGEKVGQLIQSVATFTGGFVIAFVKGWLLTLVLLSSIPPLVLASAVMSIVIAKVASRRQVTYSEAATVVEQTLSSIRTVASFTGEKQAIAKYNQSLTKAYKSGVQEGMVSGFRIGSVYFIVFCAYGLAIWFGGKLVLEKGYAGGNITTVIFAIMTGSLSLGQASPSLSALASGRAAAFKMFETINRKPDIDAYETTGQQLDDIGGDIELRDVSFSYPSRPDEAIFNGFSLSIPRGTTTALVGQSGSGKSTVINLIERLYDPQDGQVLIDGINIKEFQLKWIRQKIGLVSQEPVLFTGIIKENITYGKDGATEKEVREAADLANASGFIDKFPQGFDTIIGERGMQLSGGQKQRVAIARAILKDPKILLLDEATSALDVESEKNSTGGTRQNHDKQNYCYCCPPLKYCSHVELTKDPDGAYTKLISLQETEKEAEVQNVATDSDRPESISYSSNQRFSHLQTISQVGNSGHHSFSVSHALSTTIVPLETSGGEVELPPLGTSQQPPPPKVPLRRLAYLNKPEIPVLLIGTMSAVVNEAILPLFGLMVAKMVNTLYEPADELHEDSKFWALIFVVLGVSSFLVFPTRSYFFSIAGEKLVQRVRLMCFEKIIRMEVSWFDETENSSGALAAKLSTNAATVRGLVGDALGLLVQNIAYGNGKDATEAEIIAAAKMANAHKFISSLQQATSALDAESEKVVQDALDRVMVDRTTIIVAHRLSTIKGADLIAVVKNGVITEKGNHETLINKGGHYASIVDINH 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05979 875 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 644 770 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mepo3g05979 875 Pfam ABC transporter 344 492 IPR003439 GO:0005524
Mepo3g05979 875 Gene3D ABC transporter type 1, transmembrane domain 1 314 IPR036640 GO:0005524|GO:0016020
Mepo3g05979 875 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 3 290 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mepo3g05979 875 Gene3D - 315 500 IPR027417 -
Mepo3g05979 875 Gene3D - 799 872 IPR027417 -
Mepo3g05979 875 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 325 569 IPR003439 GO:0005524
Mepo3g05979 875 SUPERFAMILY ABC transporter transmembrane region 625 771 IPR036640 GO:0005524|GO:0016020
Mepo3g05979 875 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 298 - -
Mepo3g05979 875 Gene3D ABC transporter type 1, transmembrane domain 566 768 IPR036640 GO:0005524|GO:0016020
Mepo3g05979 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 509 IPR027417 -
Mepo3g05979 875 SUPERFAMILY ABC transporter transmembrane region 3 307 IPR036640 GO:0005524|GO:0016020
Mepo3g05979 875 FunFam ABC transporter B family member 25 323 514 - -
Mepo3g05979 875 FunFam ABC transporter B family member 9 1 321 - -
Mepo3g05979 875 SMART AAA_5 352 608 IPR003593 GO:0016887
Mepo3g05979 875 Pfam ABC transporter transmembrane region 3 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mepo3g05979 875 Pfam ABC transporter transmembrane region 643 771 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mepo3g05979 875 Gene3D - 526 565 IPR027417 -
Mepo3g05979 875 ProSitePatterns ABC transporters family signature. 464 478 IPR017871 GO:0005524|GO:0016887
Mepo3g05979 875 PANTHER ABC TRANSPORTER B FAMILY 1 500 IPR039421 -
Mepo3g05979 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 873 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05979 Mepo-Chr3 74009557 74013420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05979 766 875 Calmodulin-binding Proteins AT2G36910 40.000 7.88e-21 96.7