Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05977 ATGGATGTAATTTTTGAAGTGCAAAGAGGAAGACAATTCTCAATTGAAGTAGGCTTCTTCGACACAATTTTGGAAATCAAAGAAAAAATTCAAAAGTACCAAGGAATTCCAATATCCAAACAAACCTTAATCTTCAATGGCCAAATTCTTCCCGATGATGGTGACATTTGGAAATGCACGATTTTTCAAAACTCGCGCATTCACCTCATAGTCGCCGCCTCAGAGTCTGATCATCATAAACAGCCGATGGAAGACACCAAATTACATCTCAACATCAAAACTCCTTCATCCAAACCCTACTTTCCTATTGAAATCGACAAAAACGACACCGTTTTAAAGCTTAAAGAGAAAATTCACCACATTGATCAAAATAATGTCCCATTGAATCAACTCATGTTGCATGCAGCCGGTACCGAATTGCATGACAATCAATTGATACGTGATTGTGATGTTTCGGATAAAAGTGAAATTGAGGTGAGTTTTAAGCCACCAGCGGGGTCGGCGGCTTCACCAACGGTGATTGGTGGTGGTGGTGGTGGTGGTGGAGGTTCAAAGAAGTTGAAGTTTATGGTTTTACCAAAGAGTGGAACAAAGAAAATTCCTGTGGAGATGAATGCTACTGATAATATTGGAGAATTGAGGAAAGAGCTTCAAAAGATCAATCAAAGGCTTCAATTTCATCTTCCACAAGAAGGTTATTTTTTCATTTATAAGCAAAATGTTATGGATGATGAGAAATCTTTTCGATGGCACCATGTTTGTCAAGGTGACACCATTGAAATCTTTAATGGTAGTGTCACTGGTGGATCATGA 813 0.3862 MDVIFEVQRGRQFSIEVGFFDTILEIKEKIQKYQGIPISKQTLIFNGQILPDDGDIWKCTIFQNSRIHLIVAASESDHHKQPMEDTKLHLNIKTPSSKPYFPIEIDKNDTVLKLKEKIHHIDQNNVPLNQLMLHAAGTELHDNQLIRDCDVSDKSEIEVSFKPPAGSAASPTVIGGGGGGGGGSKKLKFMVLPKSGTKKIPVEMNATDNIGELRKELQKINQRLQFHLPQEGYFFIYKQNVMDDEKSFRWHHVCQGDTIEIFNGSVTGGS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05977 270 Gene3D - 188 263 - -
Mepo3g05977 270 Gene3D - 72 168 - -
Mepo3g05977 270 SUPERFAMILY Ubiquitin-like 86 170 IPR029071 -
Mepo3g05977 270 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 95 - -
Mepo3g05977 270 Coils Coil 203 223 - -
Mepo3g05977 270 Gene3D - 1 70 - -
Mepo3g05977 270 SUPERFAMILY Ubiquitin-like 184 262 IPR029071 -
Mepo3g05977 270 ProSiteProfiles Ubiquitin domain profile. 88 166 IPR000626 GO:0005515
Mepo3g05977 270 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mepo3g05977 270 FunFam Ubiquitin-like superfamily protein 1 72 - -
Mepo3g05977 270 CDD Ubl_ubiquitin_like 90 159 - -
Mepo3g05977 270 MobiDBLite consensus disorder prediction 161 181 - -
Mepo3g05977 270 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mepo3g05977 270 Pfam Ubiquitin family 6 71 IPR000626 GO:0005515
Mepo3g05977 270 Pfam Ubiquitin family 90 163 IPR000626 GO:0005515
Mepo3g05977 270 SMART ubq_7 88 162 IPR000626 GO:0005515
Mepo3g05977 270 SMART ubq_7 1 72 IPR000626 GO:0005515
Mepo3g05977 270 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05977 Mepo-Chr3 73996819 73997649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05977 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.211 1.05e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05977 - - psat:127097496 404.06