Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05974 ATGAAAGGAACGAGATTGATATCGTTGTTCTCCAAGCAGCATCTACGTCCTTCTTCTCATCCTCAATTCCGATTCTTCAACTCTTCTTCTTCATCAGCTTCCTCTAACAAGCTCTTCGTTGGAGGATTATCATGGTCTGTGGATGAAAAATCCCTCAAAGATGCTTTCTCTTCCTTTGGAGATGTCACTGAAGTGAGGATAGTGTATGATAAAGATAGTGGTAGAGCCAGAGGCTTTGGATTTGTTATCTTTTCAAACGAAGATGCTGCAAAATCTGCAAAAGATGCGATGGATGGAAAGGCATTGTTGGGTAGACCGTTGAGGATAAATTTTGCTCTTGAGAAGCCCCGTGGTATACCAGTTGTTGTTCCTCGATTTACAGATGACGGAAACTTCAACAGGCACTAA 408 0.4191 MKGTRLISLFSKQHLRPSSHPQFRFFNSSSSSASSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFALEKPRGIPVVVPRFTDDGNFNRH 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05974 135 SUPERFAMILY RNA-binding domain, RBD 21 118 IPR035979 GO:0003676
Mepo3g05974 135 SMART rrm1_1 37 110 IPR000504 GO:0003723
Mepo3g05974 135 Gene3D - 11 118 IPR012677 -
Mepo3g05974 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Mepo3g05974 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Mepo3g05974 135 CDD RRM2_NsCP33_like 37 112 - -
Mepo3g05974 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05974 Mepo-Chr3 73983535 73984664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05974 2 116 C2H2 Transcription Factor Family AT2G19380 33.043 2.62e-15 69.3