Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05972 ATGAAGAGGTTCAATAACTCAGAAACTATGGCTTCTTTGCTTTCCATGTACCAATCCAAAGAGGTGGATGTGGATCAGAGGAATGAGGCAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGCTATGAAGATGGTAGTTCAATGTTAGAGAAGAAAAGAAGACTTGGTTATGATCAAGTAAAAGCTTTAGAAAAGAGCTTTGAATTGGACAACAAGCTAGAGCCAGAGAGAAAAGTGAAGTTAGCTGAAGAATTAGGCTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCACGAACGAAAACCAAACAATTGGAAAGAGATTATAGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAGTCTTCAACAAGAGAATGAAACTCTTACTAGAAAGTTAAGAGAGTTGAAAGCGAAATTGTCAAGAGTTGAAAGCAATGAGTTAGAGAAAGAAGTAGAATGTCCAATTTCAAGAGGTATAGAAAGAGGAGGTTCAGAAAGTAATTCAAGTGGTGTAATTAAGGAAGAAAGTAATGTTGATTCTCCTATATGTTTCAATGGTTCTTTGCCAAGTTCAATGATAAATTTGGTTCATTATTATGATTCAAGAGGTTCTCAAGAGAATGTGTTTCAGAATCACTTTATGAGAATGGAGGAGCAGAATTTCTTAAGTAATAGTGAATTATTCAGTTTCTTTTCAGTTGATCAATCCCCTACTTTGTAA 768 0.3464 MKRFNNSETMASLLSMYQSKEVDVDQRNEAKGYSEEFQAMLDRLEQEDSYEDGSSMLEKKRRLGYDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARTKTKQLERDYSVLKSNFDVLKVEYSSLQQENETLTRKLRELKAKLSRVESNELEKEVECPISRGIERGGSESNSSGVIKEESNVDSPICFNGSLPSSMINLVHYYDSRGSQENVFQNHFMRMEEQNFLSNSELFSFFSVDQSPTL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05972 255 SMART HOX_1 57 118 IPR001356 GO:0003677
Mepo3g05972 255 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Mepo3g05972 255 Pfam Homeobox associated leucine zipper 114 155 IPR003106 GO:0006355|GO:0043565
Mepo3g05972 255 SUPERFAMILY Homeodomain-like 50 116 IPR009057 -
Mepo3g05972 255 CDD homeodomain 59 115 IPR001356 GO:0003677
Mepo3g05972 255 Pfam Homeodomain 60 112 IPR001356 GO:0003677
Mepo3g05972 255 FunFam homeobox-leucine zipper protein ATHB-6-like 62 108 - -
Mepo3g05972 255 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Mepo3g05972 255 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Mepo3g05972 255 Coils Coil 27 47 - -
Mepo3g05972 255 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Mepo3g05972 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 190 IPR045224 GO:0003700
Mepo3g05972 255 Coils Coil 106 168 - -
Mepo3g05972 255 Gene3D - 64 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05972 Mepo-Chr3 73958802 73960238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05972 36 169 Homeobox Transcription Factor Family AT5G65310 60.959 4.25e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo3g05972 Homeodomain 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05972 K09338 - cave:132184564 241.891