Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05910 ATGGCTCATCGATTGCTAAGGGATCATGATGCCGATGGTTGGGAACGGTCGGATTTTCCTATCATTTGTGAATCCTGTCTCGGGGATAGTCCTTATGTTCGAATGACAAAGGCCGAGTATGACAAAGAGTGCAAGATTTGTACAAGGCCGTTTACCGTTTTTAGATGGAGGCCAGGTCGTGATGCAAGATATAAAAAATCAGAGATCTGCCAAACATGTTCTAAGCTGAAGAACGTTTGTCAAGTTTGCTTGTTGGACCTTGAATACGGTCTTCCCGTTCAAGTCCGTGACACTGCTCTCAGCATCAGCTCTAATGACTCTATTCCAAAGAGTGATGTCAATAGGGAGTTTTTTGCTGAAGAGCATGACCGCAAGGCTAGAGCTGGTATTGATTATGAATCCTCTTTTGGTAAAGCACGCCCAAATGACACTATCTTGAAGCTTCAAAGGACAACACCTTATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTTCACTAGGGGTGAGTGTACTAGAGGTGCTGAGTGCCCTTACAGACATGAGATGCCTGTAACTGGTGAACTTTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTATGAAGCTACTTGGTAAGGCAGGGGAGATGAGCTCTCTGGAGGTTCCCGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTAACTGAACAGGATCTGCGTGATAACTTCTATGCCCATGGAGAAATTGAATCAGTCAAAATGGTTCTCCAACGGGCCTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCTGAAGAACTCTCAAACAAACTGGTCATCAAGGGCCTTAGGCTAAAACTGATGTGGGGAAGGCCTCAGTCAGCAAGACCTGAGTCCGACGTCTCTGATCAAGCAAGGCAGCAGGCTTCTGTGGCTCATAGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGATCAAACCCAAGGAATGCTTTACTATAACAATCCACCTCCTCCTCAGCAGGAAAGGAACTATTACCCTTCAATGGATCCCCAAAGAATGGGTGCTCTTCTTCCATCTCAAGACGGTCCTCCTGGTGGGCCTTCTGGATCAGGGGAGAACAAACCTAGTTCCGAGAAGCAGCAAATGCAACATTATGGCCGTCCTATGATGCCACCTCCACAAGGCCAGTATCATCATCATCAGTACTATCCTCCATATGGTTACATGCCACCAGTTCCCCCTTATCAACAGTACCCACCACAATACAATGCTGCGATGCCTCCACCCCAACCACCTGCTGCAAACCATCCCTATCAACATCCTATGCAACCAGGTTCTTCACAGACAGGGTCTGGACAAGCTGGGTCTGCACCAGCCGAAACTGGAACATCGACATCAGGGTCACAGCAATGA 1455 0.4674 MAHRLLRDHDADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDSIPKSDVNREFFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFFTRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMSSLEVPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSARPESDVSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPPQQERNYYPSMDPQRMGALLPSQDGPPGGPSGSGENKPSSEKQQMQHYGRPMMPPPQGQYHHHQYYPPYGYMPPVPPYQQYPPQYNAAMPPPQPPAANHPYQHPMQPGSSQTGSGQAGSAPAETGTSTSGSQQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05910 484 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Mepo3g05910 484 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 379 IPR039171 GO:0003723
Mepo3g05910 484 MobiDBLite consensus disorder prediction 334 352 - -
Mepo3g05910 484 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Mepo3g05910 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Mepo3g05910 484 SMART rrm1_1 229 297 IPR000504 GO:0003723
Mepo3g05910 484 Pfam Torus domain 151 194 IPR032297 -
Mepo3g05910 484 MobiDBLite consensus disorder prediction 454 484 - -
Mepo3g05910 484 Gene3D - 149 211 - -
Mepo3g05910 484 MobiDBLite consensus disorder prediction 334 484 - -
Mepo3g05910 484 SUPERFAMILY RNA-binding domain, RBD 213 305 IPR035979 GO:0003676
Mepo3g05910 484 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Mepo3g05910 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Mepo3g05910 484 Gene3D - 212 309 IPR012677 -
Mepo3g05910 484 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Mepo3g05910 484 MobiDBLite consensus disorder prediction 420 452 - -
Mepo3g05910 484 CDD RRM_RBM22 227 300 - -
Mepo3g05910 484 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05910 Mepo-Chr3 73426761 73429423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05910 229 474 Eukaryotic Initiation Factors Gene Family AT2G23350 27.863 1.36e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05910 K12872 - gmx:100779917 786.563