Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05884 ATGCATCACCCTCACCCCCCATCTTCATTAGTGATGAGTCCTTTCTATTATTTTGCCATGGTTCTCATAGCATCGGTTGTGTTGTATTTCCTCGTTTTTTATTTTGACGGGCAGACGCACGTCGTGGCCGGGCAGACACACGCCGCACGCAACTCAGACGAGTCAGTTATAAACACCATCCTCGTTTCCATCTACACTGCTGAATATGCACAAGAAGAATCTACGCGTGAGTGTATCATTTGTTTAGATGAATTTGAAGACAATGATCGCCTTGGTACACTCTCTCTTTGTTCTCACACTTTTCATCCCGATTGCATTGAGGCTTGGCTTCGTAGAAACGCTAAATGTCCTTTGTGTCGCTCTAGCTGTCCTCTCAATCTCTCCATGATTATAGATGTGACAGAGAGGTCACTCCCCACTCCCCAGTAG 429 0.4592 MHHPHPPSSLVMSPFYYFAMVLIASVVLYFLVFYFDGQTHVVAGQTHAARNSDESVINTILVSIYTAEYAQEESTRECIICLDEFEDNDRLGTLSLCSHTFHPDCIEAWLRRNAKCPLCRSSCPLNLSMIIDVTERSLPTPQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05884 142 Pfam Ring finger domain 77 120 IPR001841 -
Mepo3g05884 142 SUPERFAMILY RING/U-box 58 126 - -
Mepo3g05884 142 SMART ring_2 78 119 IPR001841 -
Mepo3g05884 142 PANTHER RING-H2 FINGER PROTEIN ATL16 42 128 IPR044600 GO:0016567|GO:0016740
Mepo3g05884 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 125 IPR013083 -
Mepo3g05884 142 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05884 Mepo-Chr3 73149872 73150300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05884 50 133 C3H Transcription Factor Family AT1G04360 38.889 6.67e-17 73.9